Euteleostomi ANCESTRAL SPECIES ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Sarcopterygii ANCESTRAL SPECIES 2 ENSGT00940000161360 #17 ENSGT00940000169825 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Tetrapoda ANCESTRAL SPECIES 3 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Amniota ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Mammalia ANCESTRAL SPECIES 1 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Theria ANCESTRAL SPECIES 6 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Eutheria ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Boreoeutheria ANCESTRAL SPECIES 8 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Euarchontoglires ANCESTRAL SPECIES 9 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Primates ANCESTRAL SPECIES 10 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Haplorrhini ANCESTRAL SPECIES 23 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Simiiformes ANCESTRAL SPECIES 10 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Catarrhini ANCESTRAL SPECIES 14 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Hominoidea ANCESTRAL SPECIES 10 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Hominidae ANCESTRAL SPECIES 12 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Homo/Pan/Gorilla group ANCESTRAL SPECIES 11 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Homo/Pan group ANCESTRAL SPECIES 10 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Human MODERN SPECIES 16 SHISA3 (ENSG00000178343) #17 BEND4 (ENSG00000188848) #18 SLC30A9 (ENSG00000014824) #19 DCAF4L1 (ENSG00000182308) #20 TMEM33 (ENSG00000109133) #21 PHOX2B (ENSG00000109132) #22 LIMCH1 (ENSG00000064042) #23 UCHL1 (ENSG00000154277) #24 ENSG00000289761 #25 APBB2 (ENSG00000163697) #26 NSUN7 (ENSG00000179299) #27 Pan ANCESTRAL SPECIES 7 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Chimpanzee MODERN SPECIES 17 ATP8A1 (ENSPTRG00000016017) SHISA3 (ENSPTRG00000016016) #17 BEND4 (ENSPTRG00000016015) #18 SLC30A9 (ENSPTRG00000016014) #19 TMEM33 (ENSPTRG00000016012) #21 PHOX2B (ENSPTRG00000016011) #22 LIMCH1 (ENSPTRG00000016010) #23 UCHL1 (ENSPTRG00000016009) #24 APBB2 (ENSPTRG00000016008) #26 NSUN7 (ENSPTRG00000016007) #27 RBM47 (ENSPTRG00000016006) Bonobo MODERN SPECIES 17 ATP8A1 (ENSPPAG00000042514) SHISA3 (ENSPPAG00000028304) #17 ENSPPAG00000039888 #18 SLC30A9 (ENSPPAG00000036274) #19 TMEM33 (ENSPPAG00000000044) #21 PHOX2B (ENSPPAG00000037431) #22 LIMCH1 (ENSPPAG00000030297) #23 ENSPPAG00000038350 #24 ENSPPAG00000038072 APBB2 (ENSPPAG00000037504) #26 NSUN7 (ENSPPAG00000023705) #27 Gorilla MODERN SPECIES 17 ATP8A1 (ENSGGOG00000027123) SHISA3 (ENSGGOG00000026724) #17 BEND4 (ENSGGOG00000002767) #18 SLC30A9 (ENSGGOG00000001861) #19 TMEM33 (ENSGGOG00000009141) #21 PHOX2B (ENSGGOG00000006225) #22 LIMCH1 (ENSGGOG00000003779) #23 UCHL1 (ENSGGOG00000008809) #24 APBB2 (ENSGGOG00000007435) #26 NSUN7 (ENSGGOG00000034897) #27 RBM47 (ENSGGOG00000001367) Orangutan MODERN SPECIES 17 SHISA3 (ENSPPYG00000014698) #17 BEND4 (ENSPPYG00000014697) #18 SLC30A9 (ENSPPYG00000014696) #19 DCAF4L1 (ENSPPYG00000014695) #20 TMEM33 (ENSPPYG00000014694) #21 PHOX2B (ENSPPYG00000014693) #22 LIMCH1 (ENSPPYG00000014692) #23 ENSPPYG00000014691 #24 ENSPPYG00000035163 APBB2 (ENSPPYG00000014690) #26 NSUN7 (ENSPPYG00000014689) #27 Gibbon MODERN SPECIES 12 ENSNLEG00000030271 #17 BEND4 (ENSNLEG00000017262) #18 SLC30A9 (ENSNLEG00000017245) #19 ENSNLEG00000035036 TMEM33 (ENSNLEG00000017242) #21 PHOX2B (ENSNLEG00000029231) #22 LIMCH1 (ENSNLEG00000017187) #23 UCHL1 (ENSNLEG00000034128) #24 APBB2 (ENSNLEG00000017166) #26 NSUN7 (ENSNLEG00000017157) #27 RBM47 (ENSNLEG00000017151) Cercopithecidae ANCESTRAL SPECIES 10 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018145.cb.a.a.b.b Rhinopithecus ANCESTRAL SPECIES 119 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018145.cb.a.a.b.b Golden snub-nosed monkey MODERN SPECIES 735 SLC30A9 (ENSRROG00000045477) #19 TMEM33 (ENSRROG00000011935) #21 PHOX2B (ENSRROG00000012499) #22 LIMCH1 (ENSRROG00000044353) #23 UCHL1 (ENSRROG00000034961) #24 APBB2 (ENSRROG00000045482) #26 NSUN7 (ENSRROG00000045529) #27 ENSRROG00000007474 Black snub-nosed monkey MODERN SPECIES 150 BEND4 (ENSRBIG00000037252) #18 SLC30A9 (ENSRBIG00000040780) #19 TMEM33 (ENSRBIG00000039007) #21 PHOX2B (ENSRBIG00000031327) #22 LIMCH1 (ENSRBIG00000034789) #23 UCHL1 (ENSRBIG00000039711) #24 APBB2 (ENSRBIG00000040300) #26 NSUN7 (ENSRBIG00000021583) #27 ENSRBIG00000036624 Cercopithecinae ANCESTRAL SPECIES 14 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018145.cb.a.a.b.b Vervet Monkey MODERN SPECIES 19 SHISA3 (ENSCSAG00000017105) #17 BEND4 (ENSCSAG00000017101) #18 SLC30A9 (ENSCSAG00000017099) #19 DCAF4L1 (ENSCSAG00000019689) #20 TMEM33 (ENSCSAG00000017098) #21 PHOX2B (ENSCSAG00000017089) #22 LIMCH1 (ENSCSAG00000017086) #23 ENSCSAG00000017081 UCHL1 (ENSCSAG00000017078) #24 APBB2 (ENSCSAG00000017076) #26 NSUN7 (ENSCSAG00000017072) #27 Cercopithecinae_a ANCESTRAL SPECIES 13 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018052.l.a Macaca ANCESTRAL SPECIES 25 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018052.l.a Pig-tailed macaque MODERN SPECIES 141 ATP8A1 (ENSMNEG00000033798) SHISA3 (ENSMNEG00000030546) #17 BEND4 (ENSMNEG00000043661) #18 SLC30A9 (ENSMNEG00000041452) #19 TMEM33 (ENSMNEG00000007879) #21 PHOX2B (ENSMNEG00000029523) #22 LIMCH1 (ENSMNEG00000036281) #23 UCHL1 (ENSMNEG00000034568) #24 APBB2 (ENSMNEG00000041561) #26 NSUN7 (ENSMNEG00000038051) #27 ENSMNEG00000024106 Macaca_a ANCESTRAL SPECIES 12 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018052.l.a Rhesus MODERN SPECIES 15 BEND4 (ENSMMUG00000015808) #18 ENSMMUG00000057051 SLC30A9 (ENSMMUG00000022782) #19 DCAF4L1 (ENSMMUG00000022781) #20 TMEM33 (ENSMMUG00000020940) #21 PHOX2B (ENSMMUG00000051296) #22 LIMCH1 (ENSMMUG00000007805) #23 UCHL1 (ENSMMUG00000013071) #24 APBB2 (ENSMMUG00000012563) #26 NSUN7 (ENSMMUG00000012561) #27 ENSMMUG00000030357 Cercopithecinae_b ANCESTRAL SPECIES 6 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018052.l.a Olive baboon MODERN SPECIES 13 BEND4 (ENSPANG00000016087) #18 SLC30A9 (ENSPANG00000024558) #19 ENSPANG00000017113 DCAF4L1 (ENSPANG00000013516) #20 TMEM33 (ENSPANG00000031907) #21 PHOX2B (ENSPANG00000022050) #22 LIMCH1 (ENSPANG00000025221) #23 ENSPANG00000044183 UCHL1 (ENSPANG00000016830) #24 APBB2 (ENSPANG00000012562) #26 NSUN7 (ENSPANG00000001045) #27 Cercopithecinae_d ANCESTRAL SPECIES 116 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00390000018052.l.a Drill MODERN SPECIES 968 SLC30A9 (ENSMLEG00000028894) #19 TMEM33 (ENSMLEG00000040380) #21 ENSMLEG00000041375 #22 LIMCH1 (ENSMLEG00000043546) #23 UCHL1 (ENSMLEG00000022377) #24 APBB2 (ENSMLEG00000036820) #26 NSUN7 (ENSMLEG00000043315) #27 ENSMLEG00000016773 Sooty mangabey MODERN SPECIES 639 ATP8A1 (ENSCATG00000042033) SHISA3 (ENSCATG00000029387) #17 BEND4 (ENSCATG00000044197) #18 SLC30A9 (ENSCATG00000033293) #19 TMEM33 (ENSCATG00000027703) #21 PHOX2B (ENSCATG00000033677) #22 LIMCH1 (ENSCATG00000035343) #23 UCHL1 (ENSCATG00000031398) #24 APBB2 (ENSCATG00000035170) #26 NSUN7 (ENSCATG00000043174) #27 ENSCATG00000033739 Platyrrhini ANCESTRAL SPECIES 5 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00940000166990 #20 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306.n #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Mas night monkey MODERN SPECIES 845 ENSANAG00000004974 BEND4 (ENSANAG00000037996) #18 ENSANAG00000036969 #20 SLC30A9 (ENSANAG00000026930) #19 TMEM33 (ENSANAG00000038169) #21 PHOX2B (ENSANAG00000031544) #22 LIMCH1 (ENSANAG00000004850) #23 ENSANAG00000028526 #24 APBB2 (ENSANAG00000030667) #26 ENSANAG00000038288 NSUN7 (ENSANAG00000020755) #27 Cebidae ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306.n #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979.q.b Marmoset MODERN SPECIES 15 SHISA3 (ENSCJAG00000084799) #17 ENSCJAG00000087388 BEND4 (ENSCJAG00000019212) #18 SLC30A9 (ENSCJAG00000019226) #19 TMEM33 (ENSCJAG00000038683) #21 PHOX2B (ENSCJAG00000039048) #22 LIMCH1 (ENSCJAG00000019269) #23 ENSCJAG00000086935 ENSCJAG00000019346 #24 APBB2 (ENSCJAG00000019363) #26 NSUN7 (ENSCJAG00000019381) #27 Cebidae_a ANCESTRAL SPECIES 63 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306.n #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979.q.b Bolivian squirrel monkey MODERN SPECIES 181 ENSSBOG00000023006 ENSSBOG00000020950 BEND4 (ENSSBOG00000029578) #18 SLC30A9 (ENSSBOG00000017106) #19 TMEM33 (ENSSBOG00000000731) #21 ENSSBOG00000020864 #22 LIMCH1 (ENSSBOG00000035135) #23 ENSSBOG00000029882 ENSSBOG00000023714 #24 APBB2 (ENSSBOG00000024376) #26 NSUN7 (ENSSBOG00000033922) #27 Capuchin MODERN SPECIES 425 PHOX2B (ENSCCAG00000033282) #22 LIMCH1 (ENSCCAG00000026873) #23 UCHL1 (ENSCCAG00000027733) #24 APBB2 (ENSCCAG00000023098) #26 NSUN7 (ENSCCAG00000021089) #27 RBM47 (ENSCCAG00000030129) Tarsier MODERN SPECIES 7075 ATP8A1 (ENSTSYG00000001020) SHISA3 (ENSTSYG00000001019) #17 BEND4 (ENSTSYG00000009028) #18 SLC30A9 (ENSTSYG00000002156) #19 TMEM33 (ENSTSYG00000029905) #21 ENSTSYG00000025757 #22 LIMCH1 (ENSTSYG00000000258) #23 ENSTSYG00000037006 UCHL1 (ENSTSYG00000008305) #24 ENSTSYG00000027827 #26 Strepsirrhini ANCESTRAL SPECIES 18 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a.l #26 ENSGT00940000157352 #27 ENSGT00940000156979 Bushbaby MODERN SPECIES 296 BEND4 (ENSOGAG00000000503) #18 SLC30A9 (ENSOGAG00000000501) #19 TMEM33 (ENSOGAG00000000497) #21 PHOX2B (ENSOGAG00000003736) #22 LIMCH1 (ENSOGAG00000003731) #23 ENSOGAG00000028965 UCHL1 (ENSOGAG00000010213) #24 APBB2 (ENSOGAG00000034915) #26 NSUN7 (ENSOGAG00000004278) #27 Lemuriformes ANCESTRAL SPECIES 39 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a.l #26 ENSGT00940000157352 #27 Mouse lemur MODERN SPECIES 135 PHOX2B (ENSMICG00000028328) #22 ENSMICG00000047961 #23 UCHL1 (ENSMICG00000044964) #24 APBB2 (ENSMICG00000011164) #26 NSUN7 (ENSMICG00000028347) #27 Lemuriformes_a ANCESTRAL SPECIES 30 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a.l #26 ENSGT00940000157352 #27 Greater bamboo lemur MODERN SPECIES 178 ATP8A1 (ENSPSMG00000022750) SHISA3 (ENSPSMG00000022821) #17 ENSPSMG00000022825 SLC30A9 (ENSPSMG00000022894) #19 TMEM33 (ENSPSMG00000022925) #21 PHOX2B (ENSPSMG00000022940) #22 LIMCH1 (ENSPSMG00000023135) #23 UCHL1 (ENSPSMG00000023245) #24 Coquerels sifaka MODERN SPECIES 410 GRXCR1 (ENSPCOG00000018107) ATP8A1 (ENSPCOG00000021333) BEND4 (ENSPCOG00000019387) #18 SLC30A9 (ENSPCOG00000016912) #19 TMEM33 (ENSPCOG00000020187) #21 PHOX2B (ENSPCOG00000020834) #22 LIMCH1 (ENSPCOG00000025321) #23 ENSPCOG00000020083 #24 APBB2 (ENSPCOG00000021739) #26 NSUN7 (ENSPCOG00000005945) #27 Euarchontoglires_A ANCESTRAL SPECIES 9 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Glires ANCESTRAL SPECIES 8 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Lagomorpha ANCESTRAL SPECIES 3 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Rabbit MODERN SPECIES 11 ENSOCUG00000011108 #17 ATP8A1 (ENSOCUG00000013152) BEND4 (ENSOCUG00000029507) #18 SLC30A9 (ENSOCUG00000017135) #19 TMEM33 (ENSOCUG00000017130) #21 ENSOCUG00000001021 #22 ENSOCUG00000032570 LIMCH1 (ENSOCUG00000015547) #23 ENSOCUG00000015459 UCHL1 (ENSOCUG00000001353) #24 APBB2 (ENSOCUG00000016932) #26 Pika MODERN SPECIES 1901 ENSOPRG00000001047 #22 ENSOPRG00000001009 #23 Rodentia ANCESTRAL SPECIES 13 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Rodentia_B ANCESTRAL SPECIES 19 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00940000167736 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 Kangaroo rat MODERN SPECIES 327 Atp8a1 (ENSDORG00000007453) Shisa3 (ENSDORG00000025636) #17 Bend4 (ENSDORG00000003192) #18 Slc30a9 (ENSDORG00000005518) #19 Tmem33 (ENSDORG00000011302) #21 Phox2b (ENSDORG00000025590) #22 ENSDORG00000028939 Uchl1 (ENSDORG00000004088) #24 ENSDORG00000023461 #26 ENSDORG00000026675 #26 Nsun7 (ENSDORG00000001763) #27 Myomorpha ANCESTRAL SPECIES 19 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00940000167736 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 Lesser Egyptian jerboa MODERN SPECIES 68 Atp8a1 (ENSJJAG00000019331) Shisa3 (ENSJJAG00000000616) #17 Bend4 (ENSJJAG00000020096) #18 Slc30a9 (ENSJJAG00000017991) #19 Tmem33 (ENSJJAG00000014482) #21 Phox2b (ENSJJAG00000020459) #22 ENSJJAG00000016303 Uchl1 (ENSJJAG00000018713) #24 ENSJJAG00000019915 #26 ENSJJAG00000012253 #26 Nsun7 (ENSJJAG00000001669) #27 Muroidea ANCESTRAL SPECIES 17 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00940000167736 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 Upper Galilee mountains blind mole rat MODERN SPECIES 554 Atp8a1 (ENSNGAG00000014964) Shisa3 (ENSNGAG00000020829) #17 Bend4 (ENSNGAG00000022724) #18 Slc30a9 (ENSNGAG00000006701) #19 Tmem33 (ENSNGAG00000012999) #21 Phox2b (ENSNGAG00000010749) #22 ENSNGAG00000007575 Uchl1 (ENSNGAG00000011045) #24 ENSNGAG00000000928 #26 ENSNGAG00000001237 #26 Nsun7 (ENSNGAG00000009927) #27 Muroidea_A ANCESTRAL SPECIES 13 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Murinae ANCESTRAL SPECIES 12 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Rat MODERN SPECIES 5 Shisa3 (ENSRNOG00000025670) #17 ENSRNOG00000067394 Bend4 (ENSRNOG00000053303) #18 Slc30a9 (ENSRNOG00000002246) #19 Tmem33 (ENSRNOG00000002254) #21 Phox2b (ENSRNOG00000051929) #22 ENSRNOG00000065993 Limch1 (ENSRNOG00000002318) #23 Uchl1 (ENSRNOG00000002343) #24 Apbb2 (ENSRNOG00000063717) #26 Nsun7 (ENSRNOG00000025494) #27 Mus ANCESTRAL SPECIES 14 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Shrew mouse MODERN SPECIES 4 Atp8a1 (MGP_PahariEiJ_G0017050) Shisa3 (MGP_PahariEiJ_G0017049) #17 Bend4 (MGP_PahariEiJ_G0017048) #18 Slc30a9 (MGP_PahariEiJ_G0017047) #19 Tmem33 (MGP_PahariEiJ_G0017046) #21 Phox2b (MGP_PahariEiJ_G0017045) #22 MGP_PahariEiJ_G0017044 #23 Uchl1 (MGP_PahariEiJ_G0017043) #24 Apbb2 (MGP_PahariEiJ_G0017042) #26 Nsun7 (MGP_PahariEiJ_G0017041) #27 Rbm47 (MGP_PahariEiJ_G0017040) Mus_A ANCESTRAL SPECIES 6 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Ryukyu mouse MODERN SPECIES 14 Atp8a1 (MGP_CAROLIEiJ_G0027268) Shisa3 (MGP_CAROLIEiJ_G0027267) #17 MGP_CAROLIEiJ_G0027266 Slc30a9 (MGP_CAROLIEiJ_G0027265) #19 Tmem33 (MGP_CAROLIEiJ_G0027264) #21 Phox2b (MGP_CAROLIEiJ_G0027263) #22 MGP_CAROLIEiJ_G0027262 #23 Uchl1 (MGP_CAROLIEiJ_G0027261) #24 Apbb2 (MGP_CAROLIEiJ_G0027260) #26 Nsun7 (MGP_CAROLIEiJ_G0027259) #27 Rbm47 (MGP_CAROLIEiJ_G0027258) Mus_B ANCESTRAL SPECIES 4 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Mouse MODERN SPECIES 14 Atp8a1 (ENSMUSG00000037685) Shisa3 (ENSMUSG00000050010) #17 Bend4 (ENSMUSG00000092060) #18 Slc30a9 (ENSMUSG00000029221) #19 Tmem33 (ENSMUSG00000037720) #21 Phox2b (ENSMUSG00000012520) #22 Limch1 (ENSMUSG00000037736) #23 Uchl1 (ENSMUSG00000029223) #24 ENSMUSG00000121580 Apbb2 (ENSMUSG00000029207) #26 Nsun7 (ENSMUSG00000029206) #27 Mus_C ANCESTRAL SPECIES 4 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Steppe mouse MODERN SPECIES 3316 Shisa3 (ENSMSIG00000007517) #17 ENSMSIG00000007536 Bend4 (ENSMSIG00000007561) #18 Slc30a9 (ENSMSIG00000007605) #19 Tmem33 (ENSMSIG00000007753) #21 ENSMSIG00000007808 #22 ENSMSIG00000007839 ENSMSIG00000007868 #23 ENSMSIG00000008346 ENSMSIG00000008357 #24 Apbb2 (ENSMSIG00000008399) #26 spretus MODERN SPECIES 14 Atp8a1 (MGP_SPRETEiJ_G0028263) Shisa3 (MGP_SPRETEiJ_G0028262) #17 Bend4 (MGP_SPRETEiJ_G0028261) #18 Slc30a9 (MGP_SPRETEiJ_G0028260) #19 Tmem33 (MGP_SPRETEiJ_G0028259) #21 Phox2b (MGP_SPRETEiJ_G0028258) #22 MGP_SPRETEiJ_G0028257 #23 Uchl1 (MGP_SPRETEiJ_G0028256) #24 Apbb2 (MGP_SPRETEiJ_G0028255) #26 Nsun7 (MGP_SPRETEiJ_G0028254) #27 Rbm47 (MGP_SPRETEiJ_G0028253) Cricetidae ANCESTRAL SPECIES 14 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Cricetidae_B ANCESTRAL SPECIES 9 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Prairie vole MODERN SPECIES 349 Atp8a1 (ENSMOCG00000017878) Shisa3 (ENSMOCG00000013211) #17 Bend4 (ENSMOCG00000007754) #18 Slc30a9 (ENSMOCG00000014575) #19 Tmem33 (ENSMOCG00000012538) #21 Phox2b (ENSMOCG00000021271) #22 ENSMOCG00000000809 Uchl1 (ENSMOCG00000022795) #24 Apbb2 (ENSMOCG00000018223) #26 Nsun7 (ENSMOCG00000022890) #27 Rbm47 (ENSMOCG00000021170) Northern American deer mouse MODERN SPECIES 1 Shisa3 (ENSPEMG00000028475) #17 ENSPEMG00000027044 Bend4 (ENSPEMG00000006992) #18 Slc30a9 (ENSPEMG00000001557) #19 Tmem33 (ENSPEMG00000000152) #21 Phox2b (ENSPEMG00000018940) #22 Limch1 (ENSPEMG00000025597) #23 Uchl1 (ENSPEMG00000018397) #24 Apbb2 (ENSPEMG00000015801) #26 Nsun7 (ENSPEMG00000012313) #27 Rbm47 (ENSPEMG00000011088) Cricetinae ANCESTRAL SPECIES 9 ENSGT00940000157110.j ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Golden Hamster MODERN SPECIES 663 Atp8a1 (ENSMAUG00000016814) Shisa3 (ENSMAUG00000016451) #17 Bend4 (ENSMAUG00000016957) #18 Slc30a9 (ENSMAUG00000017862) #19 Tmem33 (ENSMAUG00000001136) #21 ENSMAUG00000001793 #22 ENSMAUG00000002781 Uchl1 (ENSMAUG00000000614) #24 Apbb2 (ENSMAUG00000008649) #26 ENSMAUG00000012067 #27 ENSMAUG00000012177 Chinese hamster chok1gshd MODERN SPECIES 44 Atp8a1 (ENSCGRG00001003884) Shisa3 (ENSCGRG00001015431) #17 Bend4 (ENSCGRG00001013688) #18 Slc30a9 (ENSCGRG00001010316) #19 Tmem33 (ENSCGRG00001013647) #21 Phox2b (ENSCGRG00001010872) #22 Limch1 (ENSCGRG00001013948) #23 Uchl1 (ENSCGRG00001021631) #24 ENSCGRG00001020273 Apbb2 (ENSCGRG00001023252) #26 Nsun7 (ENSCGRG00001011649) #27 Rodentia_A ANCESTRAL SPECIES 20 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Hystricomorpha ANCESTRAL SPECIES 26 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Naked mole-rat female MODERN SPECIES 1 SHISA3 (ENSHGLG00000039110) #17 ENSHGLG00000038031 BEND4 (ENSHGLG00000015366) #18 ENSHGLG00000015611 #19 ENSHGLG00000019326 ENSHGLG00000042479 #22 ENSHGLG00000048153 ENSHGLG00000039353 ENSHGLG00000008342 #23 UCHL1 (ENSHGLG00000010549) #24 APBB2 (ENSHGLG00000010525) #26 Hystricomorpha_a ANCESTRAL SPECIES 23 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Guinea pig MODERN SPECIES 24 ATP8A1 (ENSCPOG00000014331) SHISA3 (ENSCPOG00000038797) #17 BEND4 (ENSCPOG00000019773) #18 SLC30A9 (ENSCPOG00000000374) #19 TMEM33 (ENSCPOG00000010051) #21 PHOX2B (ENSCPOG00000027349) #22 LIMCH1 (ENSCPOG00000010471) #23 UCHL1 (ENSCPOG00000001263) #24 APBB2 (ENSCPOG00000006689) #26 NSUN7 (ENSCPOG00000006682) #27 ENSCPOG00000022129 Hystricomorpha_b ANCESTRAL SPECIES 37 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Long-tailed chinchilla MODERN SPECIES 150 ATP8A1 (ENSCLAG00000002403) SHISA3 (ENSCLAG00000002680) #17 BEND4 (ENSCLAG00000002737) #18 SLC30A9 (ENSCLAG00000002935) #19 TMEM33 (ENSCLAG00000001907) #21 PHOX2B (ENSCLAG00000001994) #22 LIMCH1 (ENSCLAG00000002052) #23 UCHL1 (ENSCLAG00000001405) #24 APBB2 (ENSCLAG00000001675) #26 NSUN7 (ENSCLAG00000001525) #27 RBM47 (ENSCLAG00000001684) Degu MODERN SPECIES 199 BEND4 (ENSODEG00000002205) #18 SLC30A9 (ENSODEG00000003084) #19 ENSODEG00000018861 TMEM33 (ENSODEG00000003005) #21 ENSODEG00000002986 PHOX2B (ENSODEG00000002961) #22 ENSODEG00000002940 ENSODEG00000018864 ENSODEG00000002924 UCHL1 (ENSODEG00000002591) #24 ENSODEG00000002557 Sciuridae ANCESTRAL SPECIES 19 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Eurasian red squirrel MODERN SPECIES 18 ENSSVLG00005025339 SHISA3 (ENSSVLG00005025344) #17 BEND4 (ENSSVLG00005025355) #18 SLC30A9 (ENSSVLG00005025379) #19 TMEM33 (ENSSVLG00005007360) #21 PHOX2B (ENSSVLG00005007398) #22 LIMCH1 (ENSSVLG00005007528) #23 UCHL1 (ENSSVLG00005007705) #24 APBB2 (ENSSVLG00005007843) #26 ENSSVLG00005007930 NSUN7 (ENSSVLG00005007978) #27 Marmotini ANCESTRAL SPECIES 26 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Alpin marmot MODERN SPECIES 9 ATP8A1 (ENSMMMG00000019070) SHISA3 (ENSMMMG00000019019) #17 BEND4 (ENSMMMG00000018996) #18 SLC30A9 (ENSMMMG00000018947) #19 TMEM33 (ENSMMMG00000018883) #21 ENSMMMG00000018876 #22 LIMCH1 (ENSMMMG00000018696) #23 UCHL1 (ENSMMMG00000018648) #24 APBB2 (ENSMMMG00000018359) #26 NSUN7 (ENSMMMG00000018316) #27 RBM47 (ENSMMMG00000018293) Marmotini_b ANCESTRAL SPECIES 48 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Arctic ground squirrel MODERN SPECIES 2 SHISA3 (ENSUPAG00010019642) #17 ENSUPAG00010019638 BEND4 (ENSUPAG00010019629) #18 SLC30A9 (ENSUPAG00010019599) #19 TMEM33 (ENSUPAG00010019588) #21 PHOX2B (ENSUPAG00010019582) #22 LIMCH1 (ENSUPAG00010019176) #23 UCHL1 (ENSUPAG00010019140) #24 APBB2 (ENSUPAG00010018869) #26 NSUN7 (ENSUPAG00010018841) #27 ENSUPAG00010018839 Squirrel MODERN SPECIES 82 ATP8A1 (ENSSTOG00000000732) SHISA3 (ENSSTOG00000013256) #17 BEND4 (ENSSTOG00000005414) #18 SLC30A9 (ENSSTOG00000005375) #19 TMEM33 (ENSSTOG00000005368) #21 PHOX2B (ENSSTOG00000022720) #22 LIMCH1 (ENSSTOG00000005652) #23 UCHL1 (ENSSTOG00000015507) #24 ENSSTOG00000009171 #26 NSUN7 (ENSSTOG00000009153) #27 ENSSTOG00000002665 Laurasiatheria ANCESTRAL SPECIES 11 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000159958 #22 Hedgehog MODERN SPECIES 16310 PHOX2B (ENSEEUG00000000917) #22 Common shrew MODERN SPECIES 12785 PHOX2B (ENSSARG00000012126) #22 Laurasiatheria_a ANCESTRAL SPECIES 8 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Artiodactyla ANCESTRAL SPECIES 12 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Suina ANCESTRAL SPECIES 33 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Chacoan peccary MODERN SPECIES 960 ATP8A1 (ENSCWAG00000019043) SHISA3 (ENSCWAG00000019009) #17 BEND4 (ENSCWAG00000018970) #18 SLC30A9 (ENSCWAG00000018928) #19 TMEM33 (ENSCWAG00000018907) #21 PHOX2B (ENSCWAG00000018886) #22 LIMCH1 (ENSCWAG00000018166) #23 UCHL1 (ENSCWAG00000018037) #24 APBB2 (ENSCWAG00000017473) #26 NSUN7 (ENSCWAG00000017278) #27 RBM47 (ENSCWAG00000017147) Pig MODERN SPECIES 16 ATP8A1 (ENSSSCG00000008803) SHISA3 (ENSSSCG00000040147) #17 BEND4 (ENSSSCG00000008802) #18 SLC30A9 (ENSSSCG00000008801) #19 TMEM33 (ENSSSCG00000037305) #21 PHOX2B (ENSSSCG00000038488) #22 LIMCH1 (ENSSSCG00000008799) #23 ENSSSCG00000058936 UCHL1 (ENSSSCG00000022945) #24 APBB2 (ENSSSCG00000022168) #26 NSUN7 (ENSSSCG00000024496) #27 Artiodactyla_a ANCESTRAL SPECIES 12 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Camelidae ANCESTRAL SPECIES 22 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Arabian camel MODERN SPECIES 11 ATP8A1 (ENSCDRG00005004178) SHISA3 (ENSCDRG00005004304) #17 BEND4 (ENSCDRG00005004330) #18 SLC30A9 (ENSCDRG00005004359) #19 TMEM33 (ENSCDRG00005004415) #21 ENSCDRG00005004450 #22 ENSCDRG00005004465 LIMCH1 (ENSCDRG00005004629) #23 UCHL1 (ENSCDRG00005008827) #24 APBB2 (ENSCDRG00005009106) #26 NSUN7 (ENSCDRG00005009315) #27 Artiodactyla_b ANCESTRAL SPECIES 16 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Cetacea ANCESTRAL SPECIES 12 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Odontoceti ANCESTRAL SPECIES 11 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000160888.h ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Odontoceti_a ANCESTRAL SPECIES 23 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000160888.h ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Odontoceti_b ANCESTRAL SPECIES 11 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000160888.h ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Monodontidae ANCESTRAL SPECIES 9 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Narwhal MODERN SPECIES 307 ENSMMNG00015006098 SHISA3 (ENSMMNG00015006109) #17 BEND4 (ENSMMNG00015006129) #18 SLC30A9 (ENSMMNG00015006161) #19 TMEM33 (ENSMMNG00015006218) #21 PHOX2B (ENSMMNG00015006234) #22 LIMCH1 (ENSMMNG00015006482) #23 UCHL1 (ENSMMNG00015006970) #24 APBB2 (ENSMMNG00015007025) #26 NSUN7 (ENSMMNG00015007085) #27 RBM47 (ENSMMNG00015007138) Beluga whale MODERN SPECIES 77 ENSDLEG00000013128 SHISA3 (ENSDLEG00000013138) #17 BEND4 (ENSDLEG00000013154) #18 SLC30A9 (ENSDLEG00000013177) #19 TMEM33 (ENSDLEG00000013216) #21 PHOX2B (ENSDLEG00000013234) #22 LIMCH1 (ENSDLEG00000013278) #23 UCHL1 (ENSDLEG00000013507) #24 APBB2 (ENSDLEG00000013538) #26 NSUN7 (ENSDLEG00000013631) #27 RBM47 (ENSDLEG00000013655) Vaquita MODERN SPECIES 16 ATP8A1 (ENSPSNG00000003152) SHISA3 (ENSPSNG00000003117) #17 BEND4 (ENSPSNG00000003092) #18 SLC30A9 (ENSPSNG00000003050) #19 TMEM33 (ENSPSNG00000003025) #21 PHOX2B (ENSPSNG00000003003) #22 LIMCH1 (ENSPSNG00000002649) #23 ENSPSNG00000002450 UCHL1 (ENSPSNG00000002426) #24 APBB2 (ENSPSNG00000002282) #26 NSUN7 (ENSPSNG00000002168) #27 Dolphin MODERN SPECIES 912 BEND4 (ENSTTRG00000003892) #18 SLC30A9 (ENSTTRG00000003877) #19 ENSTTRG00000003870 #21 PHOX2B (ENSTTRG00000003862) #22 LIMCH1 (ENSTTRG00000003814) #23 Sperm whale MODERN SPECIES 18 ENSPCTG00005012026 SHISA3 (ENSPCTG00005012062) #17 BEND4 (ENSPCTG00005012093) #18 SLC30A9 (ENSPCTG00005012190) #19 TMEM33 (ENSPCTG00005012258) #21 PHOX2B (ENSPCTG00005012317) #22 LIMCH1 (ENSPCTG00005012462) #23 ENSPCTG00005014187 ENSPCTG00005014242 #24 APBB2 (ENSPCTG00005014603) #26 NSUN7 (ENSPCTG00005014806) #27 Blue whale MODERN SPECIES 16 ENSBMSG00010004311 SHISA3 (ENSBMSG00010004322) #17 BEND4 (ENSBMSG00010004338) #18 SLC30A9 (ENSBMSG00010004377) #19 TMEM33 (ENSBMSG00010004410) #21 PHOX2B (ENSBMSG00010004426) #22 ENSBMSG00010004449 LIMCH1 (ENSBMSG00010004613) #23 UCHL1 (ENSBMSG00010005160) #24 APBB2 (ENSBMSG00010005187) #26 NSUN7 (ENSBMSG00010005244) #27 Pecora ANCESTRAL SPECIES 15 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Yarkand deer MODERN SPECIES 8 SHISA3 (ENSCHYG00000024018) #17 BEND4 (ENSCHYG00000023999) #18 SLC30A9 (ENSCHYG00000023943) #19 TMEM33 (ENSCHYG00000023907) #21 ENSCHYG00000023886 PHOX2B (ENSCHYG00000023863) #22 ENSCHYG00000023845 LIMCH1 (ENSCHYG00000019802) #23 UCHL1 (ENSCHYG00000019339) #24 ENSCHYG00000019295 APBB2 (ENSCHYG00000018748) #26 Percora_a ANCESTRAL SPECIES 18 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Siberian musk deer MODERN SPECIES 1268 BEND4 (ENSMMSG00000023604) #18 SLC30A9 (ENSMMSG00000023608) #19 ENSMMSG00000023621 ENSMMSG00000023627 TMEM33 (ENSMMSG00000023632) #21 PHOX2B (ENSMMSG00000023639) #22 LIMCH1 (ENSMMSG00000023686) #23 UCHL1 (ENSMMSG00000023900) #24 APBB2 (ENSMMSG00000023923) #26 RBM47 (ENSMMSG00000023957) CHRNA9 (ENSMMSG00000023965) Bovidae ANCESTRAL SPECIES 18 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000018318.u.b.a.a ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Caprinae ANCESTRAL SPECIES 13 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000008346 #19 ENSGT00390000018318.u.b.a.a ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00940000154349.fb.b ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Rambouillet Sheep MODERN SPECIES 22 ENSOARG00020025326 ENSOARG00020025321 ATP8A1 (ENSOARG00020025309) ENSOARG00020025253 #19 TMEM33 (ENSOARG00020025226) #21 PHOX2B (ENSOARG00020025213) #22 LIMCH1 (ENSOARG00020024678) #23 UCHL1 (ENSOARG00020024561) #24 ENSOARG00020024542 APBB2 (ENSOARG00020024292) #26 NSUN7 (ENSOARG00020024204) #27 Goat MODERN SPECIES 25 ATP8A1 (ENSCHIG00000008265) SHISA3 (ENSCHIG00000018900) #17 SLC30A9 (ENSCHIG00000006762) #19 ENSCHIG00000011864 TMEM33 (ENSCHIG00000026524) #21 PHOX2B (ENSCHIG00000017591) #22 ENSCHIG00000027062 LIMCH1 (ENSCHIG00000017113) #23 UCHL1 (ENSCHIG00000019061) #24 ENSCHIG00000010597 APBB2 (ENSCHIG00000024058) #26 Bovinae ANCESTRAL SPECIES 15 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000018318.u.b.a.a ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 American bison MODERN SPECIES 3311 BEND4 (ENSBBBG00000019344) #18 ENSBBBG00000008606 ENSBBBG00000005070 SLC30A9 (ENSBBBG00000005105) #19 TMEM33 (ENSBBBG00000005136) #21 ENSBBBG00000005144 #22 LIMCH1 (ENSBBBG00000019691) #23 UCHL1 (ENSBBBG00000019749) #24 ENSBBBG00000007915 APBB2 (ENSBBBG00000005383) #26 NSUN7 (ENSBBBG00000019942) #27 Bos ANCESTRAL SPECIES 15 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000018318.u.b.a.a ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Bos_a ANCESTRAL SPECIES 21 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Wild yak MODERN SPECIES 2740 ENSBMUG00000008682 TMEM33 (ENSBMUG00000008673) #21 PHOX2B (ENSBMUG00000008666) #22 Domestic yak MODERN SPECIES 25 ENSBGRG00000002096 SHISA3 (ENSBGRG00000002113) #17 BEND4 (ENSBGRG00000002120) #18 SLC30A9 (ENSBGRG00000002141) #19 TMEM33 (ENSBGRG00000002211) #21 PHOX2B (ENSBGRG00000002236) #22 LIMCH1 (ENSBGRG00000002320) #23 UCHL1 (ENSBGRG00000002608) #24 ENSBGRG00000002669 APBB2 (ENSBGRG00000002693) #26 ENSBGRG00000002737 Bos_b ANCESTRAL SPECIES 14 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000018318.u.b.a.a ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Hybrid Bos Indicus MODERN SPECIES 25 ATP8A1 (ENSBIXG00005011872) SHISA3 (ENSBIXG00005011897) #17 BEND4 (ENSBIXG00005011932) #18 SLC30A9 (ENSBIXG00005006425) #19 TMEM33 (ENSBIXG00005012025) #21 PHOX2B (ENSBIXG00005012048) #22 LIMCH1 (ENSBIXG00005000345) #23 UCHL1 (ENSBIXG00005012562) #24 ENSBIXG00005012590 APBB2 (ENSBIXG00005012724) #26 NSUN7 (ENSBIXG00005012787) #27 Cow DUPLICATION Cow MODERN SPECIES 25 BEND4 (ENSBTAG00000005567) #18 ENSBTAG00000051279 SLC30A9 (ENSBTAG00000020367) #19 ENSBTAG00000002550 TMEM33 (ENSBTAG00000043958) #21 PHOX2B (ENSBTAG00000044166) #22 ENSBTAG00000051208 LIMCH1 (ENSBTAG00000010677) #23 UCHL1 (ENSBTAG00000005078) #24 APBB2 (ENSBTAG00000027569) #26 NSUN7 (ENSBTAG00000001572) #27 Cow MODERN SPECIES 27 ERMP1 (ENSBTAG00000015607) RIC1 (ENSBTAG00000001283) PDCD1LG2 (ENSBTAG00000033316) CD274 (ENSBTAG00000000095) PLGRKT (ENSBTAG00000017530) INSL6 (ENSBTAG00000006651) #22 JAK2 (ENSBTAG00000012047) RCL1 (ENSBTAG00000018667) AK3 (ENSBTAG00000017147) CDC37L1 (ENSBTAG00000017137) SPATA6L (ENSBTAG00000011048) Laurasiatheria_b ANCESTRAL SPECIES 8 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Laurasiatheria_c ANCESTRAL SPECIES 8 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Chiroptera ANCESTRAL SPECIES 9 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Megabat MODERN SPECIES 1655 PHOX2B (ENSPVAG00000009666) #22 LIMCH1 (ENSPVAG00000009660) #23 Microchiroptera ANCESTRAL SPECIES 10 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Greater horseshoe bat MODERN SPECIES 23 ATP8A1 (ENSRFEG00010001910) SHISA3 (ENSRFEG00010002074) #17 BEND4 (ENSRFEG00010002093) #18 SLC30A9 (ENSRFEG00010002130) #19 TMEM33 (ENSRFEG00010002167) #21 PHOX2B (ENSRFEG00010002185) #22 LIMCH1 (ENSRFEG00010002441) #23 UCHL1 (ENSRFEG00010002861) #24 APBB2 (ENSRFEG00010002924) #26 NSUN7 (ENSRFEG00010003013) #27 ENSRFEG00010003056 Microbat MODERN SPECIES 985 ATP8A1 (ENSMLUG00000007793) ENSMLUG00000026182 BEND4 (ENSMLUG00000002615) #18 SLC30A9 (ENSMLUG00000002605) #19 TMEM33 (ENSMLUG00000006119) #21 PHOX2B (ENSMLUG00000028989) #22 ENSMLUG00000009300 #23 UCHL1 (ENSMLUG00000010138) #24 APBB2 (ENSMLUG00000004853) #26 NSUN7 (ENSMLUG00000004843) #27 RBM47 (ENSMLUG00000000889) Equus ANCESTRAL SPECIES 12 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Horse MODERN SPECIES 22 BEND4 (ENSECAG00000021008) #18 SLC30A9 (ENSECAG00000000595) #19 ENSECAG00000046997 ENSECAG00000044569 TMEM33 (ENSECAG00000011773) #21 PHOX2B (ENSECAG00000012846) #22 LIMCH1 (ENSECAG00000013348) #23 UCHL1 (ENSECAG00000018254) #24 APBB2 (ENSECAG00000020719) #26 NSUN7 (ENSECAG00000022673) #27 RBM47 (ENSECAG00000004400) Donkey MODERN SPECIES 22 ATP8A1 (ENSEASG00005008521) SHISA3 (ENSEASG00005038419) #17 BEND4 (ENSEASG00005036565) #18 SLC30A9 (ENSEASG00005008496) #19 TMEM33 (ENSEASG00005008493) #21 PHOX2B (ENSEASG00005025176) #22 LIMCH1 (ENSEASG00005008463) #23 UCHL1 (ENSEASG00005008452) #24 APBB2 (ENSEASG00005008447) #26 NSUN7 (ENSEASG00005008446) #27 RBM47 (ENSEASG00005008443) Carnivora ANCESTRAL SPECIES 5 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Caniformia ANCESTRAL SPECIES 7 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Canidae ANCESTRAL SPECIES 51 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00390000016928 ENSGT00940000157796 ENSGT00390000011314 ENSGT00550000074827 Canis_lupus ANCESTRAL SPECIES 19 ENSGT00940000161360 #17 ENSGT00390000014084.x.a ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00390000016928 ENSGT00940000157796 ENSGT00390000011314 ENSGT00550000074827 Dingo MODERN SPECIES 88 ENSCAFG00020021971 SHISA3 (ENSCAFG00020021965) #17 ENSCAFG00020021961 SLC30A9 (ENSCAFG00020021444) #19 TMEM33 (ENSCAFG00020021399) #21 PHOX2B (ENSCAFG00020021393) #22 LIMCH1 (ENSCAFG00020021385) #23 WFS1 (ENSCAFG00020021379) IREB2 (ENSCAFG00020021072) HYKK (ENSCAFG00020021063) ENSCAFG00020021060 Dog MODERN SPECIES 4 SHISA3 (ENSCAFG00845014597) #17 ENSCAFG00845014573 BEND4 (ENSCAFG00845014543) #18 SLC30A9 (ENSCAFG00845014338) #19 TMEM33 (ENSCAFG00845014117) #21 ENSCAFG00845014079 #22 LIMCH1 (ENSCAFG00845013654) #23 ENSCAFG00845013420 IREB2 (ENSCAFG00845013296) HYKK (ENSCAFG00845013245) ENSCAFG00845013139 Red fox MODERN SPECIES 216 SHISA3 (ENSVVUG00000006207) #17 ENSVVUG00000006211 BEND4 (ENSVVUG00000006213) #18 SLC30A9 (ENSVVUG00000006254) #19 TMEM33 (ENSVVUG00000007573) #21 ENSVVUG00000007581 #22 LIMCH1 (ENSVVUG00000007602) #23 WFS1 (ENSVVUG00000007775) IREB2 (ENSVVUG00000007811) HYKK (ENSVVUG00000007847) PSMA4 (ENSVVUG00000007853) Caniformia_b ANCESTRAL SPECIES 5 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Mustelinae ANCESTRAL SPECIES 63 ENSGT00950000185160 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00990000212839 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 American mink MODERN SPECIES 44 ENSNVIG00000005700 SHISA3 (ENSNVIG00000005709) #17 BEND4 (ENSNVIG00000005716) #18 ZNT9 (ENSNVIG00000005734) #19 TMEM33 (ENSNVIG00000005804) #21 PHOX2B (ENSNVIG00000005817) #22 ENSNVIG00000005828 LIMCH1 (ENSNVIG00000005858) #23 UCHL1 (ENSNVIG00000006217) #24 APBB2 (ENSNVIG00000006290) #26 NSUN7 (ENSNVIG00000006560) #27 Ferret MODERN SPECIES 263 GRXCR1 (ENSMPUG00000006538) ATP8A1 (ENSMPUG00000006496) SHISA3 (ENSMPUG00000006490) #17 BEND4 (ENSMPUG00000006483) #18 SLC30A9 (ENSMPUG00000006465) #19 ENSMPUG00000006459 #22 LIMCH1 (ENSMPUG00000006226) #23 UCHL1 (ENSMPUG00000006212) #24 APBB2 (ENSMPUG00000006192) #26 NSUN7 (ENSMPUG00000006183) #27 RBM47 (ENSMPUG00000006177) Ursidae ANCESTRAL SPECIES 29 ENSGT00950000185498 ENSGT00950000186094 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.t #23 ENSGT00940000157306.d #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Giant Panda MODERN SPECIES 2 SHISA3 (ENSAMEG00000030334) #17 ENSAMEG00000027469 ENSAMEG00000013012 #18 SLC30A9 (ENSAMEG00000013013) #19 TMEM33 (ENSAMEG00000013043) #21 PHOX2B (ENSAMEG00000013045) #22 LIMCH1 (ENSAMEG00000013049) #23 UCHL1 (ENSAMEG00000023730) #24 APBB2 (ENSAMEG00000017210) #26 NSUN7 (ENSAMEG00000017204) #27 RBM47 (ENSAMEG00000009672) Ursus ANCESTRAL SPECIES 51 ENSGT00940000161360 #17 ENSGT00950000185498 ENSGT00950000186094 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.t #23 ENSGT00940000157306.d #24 ENSGT00390000000002.a.a.a #26 ENSGT00510000047678.f ENSGT00940000157352 #27 Polar bear MODERN SPECIES 234 ENSUMAG00000001340 ENSUMAG00000001320 ENSUMAG00000001307 SLC30A9 (ENSUMAG00000001287) #19 TMEM33 (ENSUMAG00000001278) #21 ENSUMAG00000001265 #22 ENSUMAG00000001210 #23 ENSUMAG00000001196 #23 ENSUMAG00000001183 #23 UCHL1 (ENSUMAG00000001146) #24 APBB2 (ENSUMAG00000001137) #26 American black bear MODERN SPECIES 620 SLC30A9 (ENSUAMG00000009461) #19 ENSUAMG00000009460 TMEM33 (ENSUAMG00000009458) #21 PHOX2B (ENSUAMG00000009457) #22 LIMCH1 (ENSUAMG00000009049) #23 Felidae ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Cat MODERN SPECIES 235 ATP8A1 (ENSFCAG00000015213) SHISA3 (ENSFCAG00000043473) #17 BEND4 (ENSFCAG00000044080) #18 SLC30A9 (ENSFCAG00000024533) #19 TMEM33 (ENSFCAG00000040948) #21 PHOX2B (ENSFCAG00000045230) #22 LIMCH1 (ENSFCAG00000007444) #23 UCHL1 (ENSFCAG00000025457) #24 APBB2 (ENSFCAG00000012843) #26 NSUN7 (ENSFCAG00000012841) #27 ENSFCAG00000046888 Panthera ANCESTRAL SPECIES 5 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Tiger MODERN SPECIES 594 ATP8A1 (ENSPTIG00000016070) SHISA3 (ENSPTIG00000015234) #17 BEND4 (ENSPTIG00000014273) #18 SLC30A9 (ENSPTIG00000013054) #19 TMEM33 (ENSPTIG00000012144) #21 PHOX2B (ENSPTIG00000011693) #22 LIMCH1 (ENSPTIG00000012731) #23 UCHL1 (ENSPTIG00000008888) #24 APBB2 (ENSPTIG00000020993) #26 NSUN7 (ENSPTIG00000018737) #27 RBM47 (ENSPTIG00000017046) Panthera_a ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 lion MODERN SPECIES 4 ATP8A1 (ENSPLOG00000001399) SHISA3 (ENSPLOG00000001304) #17 BEND4 (ENSPLOG00000001275) #18 SLC30A9 (ENSPLOG00000001228) #19 TMEM33 (ENSPLOG00000001187) #21 PHOX2B (ENSPLOG00000001168) #22 LIMCH1 (ENSPLOG00000000891) #23 ENSPLOG00000000725 UCHL1 (ENSPLOG00000000699) #24 APBB2 (ENSPLOG00000000600) #26 NSUN7 (ENSPLOG00000000508) #27 leopard MODERN SPECIES 2 ATP8A1 (ENSPPRG00000006177) SHISA3 (ENSPPRG00000003785) #17 BEND4 (ENSPPRG00000003662) #18 SLC30A9 (ENSPPRG00000003050) #19 TMEM33 (ENSPPRG00000002750) #21 PHOX2B (ENSPPRG00000002711) #22 LIMCH1 (ENSPPRG00000001941) #23 UCHL1 (ENSPPRG00000015722) #24 APBB2 (ENSPPRG00000014629) #26 NSUN7 (ENSPPRG00000013123) #27 RBM47 (ENSPPRG00000012873) Atlantogenata ANCESTRAL SPECIES 46 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Xenarthra ANCESTRAL SPECIES 255 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Armadillo MODERN SPECIES 521 ATP8A1 (ENSDNOG00000007298) SHISA3 (ENSDNOG00000046466) #17 BEND4 (ENSDNOG00000019064) #18 SLC30A9 (ENSDNOG00000002142) #19 TMEM33 (ENSDNOG00000037119) #21 PHOX2B (ENSDNOG00000025070) #22 LIMCH1 (ENSDNOG00000018177) #23 ENSDNOG00000033529 #24 APBB2 (ENSDNOG00000014048) #26 NSUN7 (ENSDNOG00000024945) #27 RBM47 (ENSDNOG00000046854) Afrotheria ANCESTRAL SPECIES 53 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Tenrec MODERN SPECIES 4411 PHOX2B (ENSETEG00000000105) #22 ENSETEG00000000103 #23 Afrotheria_a ANCESTRAL SPECIES 50 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Elephant MODERN SPECIES 164 ATP8A1 (ENSLAFG00000015116) SHISA3 (ENSLAFG00000011875) #17 BEND4 (ENSLAFG00000010189) #18 SLC30A9 (ENSLAFG00000007021) #19 TMEM33 (ENSLAFG00000013039) #21 PHOX2B (ENSLAFG00000022070) #22 LIMCH1 (ENSLAFG00000008797) #23 UCHL1 (ENSLAFG00000002494) #24 APBB2 (ENSLAFG00000011950) #26 NSUN7 (ENSLAFG00000011942) #27 RBM47 (ENSLAFG00000011998) Hyrax MODERN SPECIES 8637 PHOX2B (ENSPCAG00000006651) #22 Marsupialia ANCESTRAL SPECIES 7 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Opossum MODERN SPECIES 4 SHISA3 (ENSMODG00000020580) #17 ENSMODG00000024819 BEND4 (ENSMODG00000020579) #18 SLC30A9 (ENSMODG00000020577) #19 TMEM33 (ENSMODG00000020574) #21 PHOX2B (ENSMODG00000020573) #22 LIMCH1 (ENSMODG00000020570) #23 ENSMODG00000045721 UCHL1 (ENSMODG00000020568) #24 APBB2 (ENSMODG00000020566) #26 NSUN7 (ENSMODG00000020564) #27 Marsupialia_b ANCESTRAL SPECIES 8 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Diprotodontia ANCESTRAL SPECIES 10 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Diprotodontia_a ANCESTRAL SPECIES 12 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Common wonbat MODERN SPECIES 1054 ATP8A1 (ENSVURG00010008432) SHISA3 (ENSVURG00010008393) #17 BEND4 (ENSVURG00010008338) #18 SLC30A9 (ENSVURG00010008120) #19 TMEM33 (ENSVURG00010008090) #21 PHOX2B (ENSVURG00010008059) #22 LIMCH1 (ENSVURG00010007981) #23 UCHL1 (ENSVURG00010007944) #24 APBB2 (ENSVURG00010007900) #26 NSUN7 (ENSVURG00010007854) #27 RBM47 (ENSVURG00010007817) koala MODERN SPECIES 2 ATP8A1 (ENSPCIG00000030201) SHISA3 (ENSPCIG00000030209) #17 BEND4 (ENSPCIG00000030213) #18 SLC30A9 (ENSPCIG00000030215) #19 TMEM33 (ENSPCIG00000022264) #21 PHOX2B (ENSPCIG00000022273) #22 LIMCH1 (ENSPCIG00000022281) #23 UCHL1 (ENSPCIG00000008045) #24 APBB2 (ENSPCIG00000019355) #26 NSUN7 (ENSPCIG00000019361) #27 ENSPCIG00000019363 Wallaby MODERN SPECIES 1825 PHOX2B (ENSMEUG00000003111) #22 Tasmanian devil MODERN SPECIES 5 ATP8A1 (ENSSHAG00000012156) SHISA3 (ENSSHAG00000026539) #17 BEND4 (ENSSHAG00000014099) #18 SLC30A9 (ENSSHAG00000014368) #19 TMEM33 (ENSSHAG00000014708) #21 PHOX2B (ENSSHAG00000015235) #22 ENSSHAG00000015379 #23 UCHL1 (ENSSHAG00000020618) #24 APBB2 (ENSSHAG00000016906) #26 NSUN7 (ENSSHAG00000017276) #27 RBM47 (ENSSHAG00000017576) Platypus MODERN SPECIES 3 ATP8A1 (ENSOANG00000001599) SHISA3 (ENSOANG00000046765) #17 BEND4 (ENSOANG00000051244) #18 SLC30A9 (ENSOANG00000000330) #19 TMEM33 (ENSOANG00000000329) #21 PHOX2B (ENSOANG00000048752) #22 ENSOANG00000046159 #23 UCHL1 (ENSOANG00000050393) #24 ENSOANG00000032250 OCIAD1 (ENSOANG00000000842) FRYL (ENSOANG00000008882) Sauria ANCESTRAL SPECIES 6 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Lepidosauria ANCESTRAL SPECIES 9 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Episquamata ANCESTRAL SPECIES 3 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Laterata ANCESTRAL SPECIES 21 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Common wall lizard MODERN SPECIES 17 SHISA3 (ENSPMRG00000012194) #17 ENSPMRG00000012195 BEND4 (ENSPMRG00000012197) #18 SLC30A9 (ENSPMRG00000012200) #19 TMEM33 (ENSPMRG00000012203) #21 PHOX2B (ENSPMRG00000012205) #22 LIMCH1 (ENSPMRG00000012232) #23 UCHL1 (ENSPMRG00000012402) #24 APBB2 (ENSPMRG00000012426) #26 NSUN7 (ENSPMRG00000012450) #27 ASAH1 (ENSPMRG00000012474) Argentine black and white tegu MODERN SPECIES 1 SHISA3 (ENSSMRG00000003495) #17 BEND4 (ENSSMRG00000003490) #18 ENSSMRG00000003485 SLC30A9 (ENSSMRG00000003472) #19 TMEM33 (ENSSMRG00000003453) #21 PHOX2B (ENSSMRG00000003448) #22 ENSSMRG00000003445 LIMCH1 (ENSSMRG00000003375) #23 UCHL1 (ENSSMRG00000003310) #24 APBB2 (ENSSMRG00000003280) #26 NSUN7 (ENSSMRG00000003268) #27 Toxicofera ANCESTRAL SPECIES 21 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Elapidae ANCESTRAL SPECIES 22 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Indian cobra MODERN SPECIES 266 PHOX2B (ENSNNAG00000012876) #22 Elapidae_a ANCESTRAL SPECIES 25 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Acanthophiinae ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Mainland tiger snake MODERN SPECIES 71 PHOX2B (ENSNSUG00000018796) #22 ENSNSUG00000018795 #23 ENSNSUG00000018794 #23 UCHL1 (ENSNSUG00000018793) #24 APBB2 (ENSNSUG00000018792) #26 NSUN7 (ENSNSUG00000018791) #27 Blue-lipped sea krait MODERN SPECIES 3163 PHOX2B (ENSLLTG00000005224) #22 tuatara MODERN SPECIES 1458 ENSSPUG00000003397 SHISA3 (ENSSPUG00000003371) #17 BEND4 (ENSSPUG00000003344) #18 SLC30A9 (ENSSPUG00000003328) #19 TMEM33 (ENSSPUG00000003322) #21 PHOX2B (ENSSPUG00000003307) #22 ENSSPUG00000003298 #23 ENSSPUG00000003290 #23 ENSSPUG00000003284 #23 ENSSPUG00000003274 #23 ENSSPUG00000003263 #23 Archelosauria ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Cryptodira ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Testudinoidea ANCESTRAL SPECIES 10 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Testudinidae ANCESTRAL SPECIES 11 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306.w #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Goode s thornscrub tortoise MODERN SPECIES 19 ATP8A1 (ENSGEVG00005006325) SHISA3 (ENSGEVG00005005719) #17 BEND4 (ENSGEVG00005005680) #18 SLC30A9 (ENSGEVG00005005646) #19 TMEM33 (ENSGEVG00005005619) #21 PHOX2B (ENSGEVG00005005600) #22 ENSGEVG00005005585 #23 ENSGEVG00005005569 #23 ENSGEVG00005005551 #23 ENSGEVG00005005479 #24 APBB2 (ENSGEVG00005005410) #26 Abingdon island giant tortoise MODERN SPECIES 2491 KLHL12 (ENSCABG00000020710) RABIF (ENSCABG00000020713) SLC30A9 (ENSCABG00000020716) #19 ENSCABG00000020721 TMEM33 (ENSCABG00000020722) #21 PHOX2B (ENSCABG00000020725) #22 ENSCABG00000020726 #23 Emydidae ANCESTRAL SPECIES 1 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 painted turtle MODERN SPECIES 743 ATP8A1 (ENSCPBG00000025631) SHISA3 (ENSCPBG00000025625) #17 BEND4 (ENSCPBG00000025624) #18 SLC30A9 (ENSCPBG00000025622) #19 ENSCPBG00000025619 PHOX2B (ENSCPBG00000025616) #22 LIMCH1 (ENSCPBG00000025607) #23 UCHL1 (ENSCPBG00000025605) #24 APBB2 (ENSCPBG00000025601) #26 ENSCPBG00000025598 ZMIZ1 (ENSCPBG00000025594) Three-toed box turtle MODERN SPECIES 26 ATP8A1 (ENSTMTG00000021147) SHISA3 (ENSTMTG00000021469) #17 BEND4 (ENSTMTG00000021475) #18 SLC30A9 (ENSTMTG00000021507) #19 TMEM33 (ENSTMTG00000021635) #21 PHOX2B (ENSTMTG00000021641) #22 LIMCH1 (ENSTMTG00000021648) #23 UCHL1 (ENSTMTG00000021664) #24 APBB2 (ENSTMTG00000021669) #26 NSUN7 (ENSTMTG00000021681) #27 RBM47 (ENSTMTG00000021727) Chinese turtle MODERN SPECIES 186 GRXCR1 (ENSPSIG00000005032) ENSPSIG00000005023 BEND4 (ENSPSIG00000005011) #18 SLC30A9 (ENSPSIG00000004755) #19 TMEM33 (ENSPSIG00000004726) #21 PHOX2B (ENSPSIG00000004721) #22 LIMCH1 (ENSPSIG00000004676) #23 Archosauria ANCESTRAL SPECIES 1 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Australian saltwater crocodile MODERN SPECIES 65 KCTD8 (ENSCPRG00005009490) GRXCR1 (ENSCPRG00005009471) ATP8A1 (ENSCPRG00005009086) SLC30A9 (ENSCPRG00005009018) #19 TMEM33 (ENSCPRG00005009011) #21 PHOX2B (ENSCPRG00005009006) #22 ENSCPRG00005008999 LIMCH1 (ENSCPRG00005008979) #23 UCHL1 (ENSCPRG00005008965) #24 APBB2 (ENSCPRG00005008926) #26 NSUN7 (ENSCPRG00005008909) #27 Aves ANCESTRAL SPECIES 3 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Neognathae ANCESTRAL SPECIES 5 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Galloanserae ANCESTRAL SPECIES 5 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Anatidae ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Duck MODERN SPECIES 22 ENSAPLG00000017077 ENSAPLG00000008428 SHISA3 (ENSAPLG00000008422) #17 SLC30A9 (ENSAPLG00000007998) #19 TMEM33 (ENSAPLG00000007860) #21 PHOX2B (ENSAPLG00000007835) #22 LIMCH1 (ENSAPLG00000007483) #23 UCHL1 (ENSAPLG00000007078) #24 NSUN7 (ENSAPLG00000006738) #27 APBB2 (ENSAPLG00000006759) #26 RBM47 (ENSAPLG00000013974) Pink-footed goose MODERN SPECIES 40 ATP8A1 (ENSABRG00000003266) SHISA3 (ENSABRG00000003485) #17 BEND4 (ENSABRG00000003493) #18 SLC30A9 (ENSABRG00000003505) #19 TMEM33 (ENSABRG00000003612) #21 PHOX2B (ENSABRG00000003656) #22 ENSABRG00000003672 #23 ENSABRG00000003758 #23 UCHL1 (ENSABRG00000003769) #24 APBB2 (ENSABRG00000003823) #26 NSUN7 (ENSABRG00000004440) #27 Phasianidae ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Japanese quail MODERN SPECIES 22 ATP8A1 (ENSCJPG00005017016) SHISA3 (ENSCJPG00005017043) #17 BEND4 (ENSCJPG00005017047) #18 SLC30A9 (ENSCJPG00005017050) #19 TMEM33 (ENSCJPG00005017054) #21 PHOX2B (ENSCJPG00005017056) #22 LIMCH1 (ENSCJPG00005017069) #23 UCHL1 (ENSCJPG00005017116) #24 APBB2 (ENSCJPG00005017120) #26 NSUN7 (ENSCJPG00005017125) #27 RBM47 (ENSCJPG00005017126) Phasianidae_b ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Chicken MODERN SPECIES 33 ATP8A1 (ENSGALG00010014393) SHISA3 (ENSGALG00010014442) #17 BEND4 (ENSGALG00010015404) #18 SLC30A9 (ENSGALG00010015436) #19 TMEM33 (ENSGALG00010015469) #21 PHOX2B (ENSGALG00010015474) #22 LIMCH1 (ENSGALG00010015570) #23 UCHL1 (ENSGALG00010015596) #24 APBB2 (ENSGALG00010015636) #26 NSUN7 (ENSGALG00010015664) #27 RBM47 (ENSGALG00010015931) Turkey MODERN SPECIES 24 ATP8A1 (ENSMGAG00000012135) SHISA3 (ENSMGAG00000012171) #17 BEND4 (ENSMGAG00000012172) #18 SLC30A9 (ENSMGAG00000012173) #19 TMEM33 (ENSMGAG00000012181) #21 PHOX2B (ENSMGAG00000015735) #22 LIMCH1 (ENSMGAG00000012183) #23 ENSMGAG00000019859 #23 UCHL1 (ENSMGAG00000012194) #24 ENSMGAG00000012205 #26 NSUN7 (ENSMGAG00000012220) #27 Neognathae_b ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Neognathae_c ANCESTRAL SPECIES 3 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Kakapo MODERN SPECIES 24 ATP8A1 (ENSSHBG00005009386) SHISA3 (ENSSHBG00005009168) #17 BEND4 (ENSSHBG00005009148) #18 SLC30A9 (ENSSHBG00005009118) #19 TMEM33 (ENSSHBG00005009104) #21 PHOX2B (ENSSHBG00005009098) #22 LIMCH1 (ENSSHBG00005009090) #23 UCHL1 (ENSSHBG00005009058) #24 APBB2 (ENSSHBG00005009031) #26 NSUN7 (ENSSHBG00005009007) #27 RBM47 (ENSSHBG00005008992) Golden eagle MODERN SPECIES ATP8A1 (ENSACCG00020000256) SHISA3 (ENSACCG00020000255) #17 BEND4 (ENSACCG00020000254) #18 SLC30A9 (ENSACCG00020000253) #19 TMEM33 (ENSACCG00020000252) #21 PHOX2B (ENSACCG00020000251) #22 LIMCH1 (ENSACCG00020000250) #23 UCHL1 (ENSACCG00020000249) #24 ENSACCG00020000248 APBB2 (ENSACCG00020000247) #26 NSUN7 (ENSACCG00020000246) #27 Passeriformes ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Great tit MODERN SPECIES 23 ATP8A1 (ENSPMJG00000015557) SHISA3 (ENSPMJG00000015613) #17 BEND4 (ENSPMJG00000015615) #18 SLC30A9 (ENSPMJG00000015616) #19 TMEM33 (ENSPMJG00000015617) #21 PHOX2B (ENSPMJG00000015619) #22 LIMCH1 (ENSPMJG00000015620) #23 ENSPMJG00000015621 #23 UCHL1 (ENSPMJG00000015622) #24 APBB2 (ENSPMJG00000015623) #26 NSUN7 (ENSPMJG00000015624) #27 Passeriformes_d ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Flycatcher MODERN SPECIES 22 GRXCR1 (ENSFALG00000002921) ATP8A1 (ENSFALG00000002916) BEND4 (ENSFALG00000027839) #18 SLC30A9 (ENSFALG00000002904) #19 TMEM33 (ENSFALG00000023416) #21 PHOX2B (ENSFALG00000023012) #22 LIMCH1 (ENSFALG00000002883) #23 UCHL1 (ENSFALG00000002871) #24 APBB2 (ENSFALG00000002869) #26 NSUN7 (ENSFALG00000002864) #27 RBM47 (ENSFALG00000002861) Passeriformes_g ANCESTRAL SPECIES 5 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Passeroidea ANCESTRAL SPECIES 4 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00960000191907 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Zebra finch MODERN SPECIES 25 ATP8A1 (ENSTGUG00000008483) SHISA3 (ENSTGUG00000027594) #17 BEND4 (ENSTGUG00000008584) #18 SLC30A9 (ENSTGUG00000008589) #19 TMEM33 (ENSTGUG00000021917) #21 PHOX2B (ENSTGUG00000008613) #22 LIMCH1 (ENSTGUG00000008618) #23 UCHL1 (ENSTGUG00000008638) #24 APBB2 (ENSTGUG00000008675) #26 NSUN7 (ENSTGUG00000008697) #27 RBM47 (ENSTGUG00000008705) Common canary MODERN SPECIES 2 KCTD8 (ENSSCAG00000007279) GRXCR1 (ENSSCAG00000007237) ATP8A1 (ENSSCAG00000005974) SLC30A9 (ENSSCAG00000005734) #19 TMEM33 (ENSSCAG00000005731) #21 PHOX2B (ENSSCAG00000005725) #22 ENSSCAG00000005717 LIMCH1 (ENSSCAG00000005701) #23 UCHL1 (ENSSCAG00000005687) #24 APBB2 (ENSSCAG00000005673) #26 NSUN7 (ENSSCAG00000005648) #27 Anura ANCESTRAL SPECIES 2 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Leishan spiny toad MODERN SPECIES SHISA3 (ENSLLEG00000014189) #17 BEND4 (ENSLLEG00000014226) #18 SLC30A9 (ENSLLEG00000014289) #19 TMEM33 (ENSLLEG00000014698) #21 ENSLLEG00000014854 PHOX2B (ENSLLEG00000014872) #22 LIMCH1 (ENSLLEG00000015026) #23 ENSLLEG00000017153 ENSLLEG00000017178 #24 ENSLLEG00000017352 APBB2 (ENSLLEG00000017410) #26 Frog MODERN SPECIES bend4 (ENSXETG00000021073) #18 slc30a9 (ENSXETG00000021074) #19 ENSXETG00000047041 tmem33 (ENSXETG00000021080) #21 ENSXETG00000048835 phox2b (ENSXETG00000021083) #22 ENSXETG00000044083 limch1 (ENSXETG00000021088) #23 uchl1 (ENSXETG00000021089) #24 ENSXETG00000049257 apbb2 (ENSXETG00000021093) #26 Coelacanth MODERN SPECIES 786 PHOX2B (ENSLACG00000004813) #22 LIMCH1 (ENSLACG00000005860) #23 UCHL1 (ENSLACG00000011434) #24 ENSLACG00000012897 #26 NSUN7 (ENSLACG00000014107) #27 Actinopterygii ANCESTRAL SPECIES 48 ENSGT00940000157110 ENSGT00940000161360 #17 ENSGT00390000014963 #18 ENSGT00390000008346 #19 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 ENSGT00940000156979 Reedfish MODERN SPECIES 13 atp8a1 (ENSECRG00000003324) shisa3 (ENSECRG00000003339) #17 BEND4 (ENSECRG00000003344) #18 slc30a9 (ENSECRG00000003352) #19 tmem33 (ENSECRG00000003376) #21 phox2bb (ENSECRG00000003389) #22 limch1a (ENSECRG00000003403) #23 uchl1 (ENSECRG00000003428) #24 APBB2 (ENSECRG00000003447) #26 NSUN7 (ENSECRG00000003476) #27 rbm47 (ENSECRG00000003505) Neopterygii ANCESTRAL SPECIES 171 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00950000183159.a.v.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a #26 ENSGT00940000157352 #27 Spotted gar MODERN SPECIES 670 pgm2 (ENSLOCG00000012883) TBC1D1 (ENSLOCG00000012895) klf3 (ENSLOCG00000012901) tlr1 (ENSLOCG00000012910) tmem33 (ENSLOCG00000012912) #21 phox2bb (ENSLOCG00000012918) #22 LIMCH1 (ENSLOCG00000012922) #23 uchl1 (ENSLOCG00000012930) #24 APBB2 (ENSLOCG00000012940) #26 NSUN7 (ENSLOCG00000012956) #27 rbm47 (ENSLOCG00000012966) Osteoglossocephalai ANCESTRAL SPECIES 173 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00950000183159.a.v.a #23 ENSGT00940000157306 #24 ENSGT00390000000002.a.a.a.nb.b #26 ENSGT00940000157352.a #27 Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 60 ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000155988.a ENSGT00940000155372 ENSGT00390000012346 ENSGT00940000159958.a #22 ENSGT00950000183159.a.v.b.w #23 ENSGT00940000157306.ib #24 ENSGT00390000000002.a.a.a.nb.a #26 ENSGT00940000157352.b #27 ENSGT00940000156979.a P. kingsleyae MODERN SPECIES 112 prom1a (ENSPKIG00000013999) fgfbp2a (ENSPKIG00000013943) ANXA5 (ENSPKIG00000013918) ccna2 (ENSPKIG00000013895) bbs7 (ENSPKIG00000013836) phox2bb (ENSPKIG00000013815) #22 LIMCH1 (ENSPKIG00000013705) #23 uchl1 (ENSPKIG00000013640) #24 APBB2 (ENSPKIG00000013543) #26 NSUN7 (ENSPKIG00000013497) #27 rbm47 (ENSPKIG00000013431) Asian bonytongue MODERN SPECIES 20 prom1a (ENSSFOG00015024120) fgfbp2a (ENSSFOG00015027699) ANXA5 (ENSSFOG00015024113) ccna2 (ENSSFOG00015024112) bbs7 (ENSSFOG00015024109) phox2bb (ENSSFOG00015012871) #22 LIMCH1 (ENSSFOG00015024106) #23 uchl1 (ENSSFOG00015024104) #24 APBB2 (ENSSFOG00015024103) #26 NSUN7 (ENSSFOG00015024102) #27 rbm47 (ENSSFOG00015028741) Osteoglossiformes ANCESTRAL SPECIES 442 ENSGT00390000011368 #21 ENSGT00940000159958.b #22 ENSGT00950000183159.a.v.b.x #23 ENSGT00940000157306.hb #24 ENSGT00390000000002.a.a.a.nb.b #26 ENSGT00940000157352.a #27 ENSGT00940000156979.b Asian bonytongue MODERN SPECIES 7 fgfbp2b (ENSSFOG00015025776) ENSSFOG00015025553 ANXA5 (ENSSFOG00015012934) exosc9 (ENSSFOG00015012903) tmem33 (ENSSFOG00015012886) #21 phox2bb (ENSSFOG00015032744) #22 LIMCH1 (ENSSFOG00015012683) #23 UCHL1 (ENSSFOG00015029264) #24 APBB2 (ENSSFOG00015012532) #26 ENSSFOG00015012494 #27 rbm47 (ENSSFOG00015012445) P. kingsleyae MODERN SPECIES 25 ENSPKIG00000005944 exosc9 (ENSPKIG00000005890) tmem33 (ENSPKIG00000005840) #21 phox2bb (ENSPKIG00000005822) #22 LIMCH1 (ENSPKIG00000005460) #23 UCHL1 (ENSPKIG00000005285) #24 APBB2 (ENSPKIG00000005155) #26 NSUN7 (ENSPKIG00000005075) #27 rbm47 (ENSPKIG00000005037) Clupeocephala ANCESTRAL SPECIES 541 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b Otomorpha DUPLICATION Otomorpha ANCESTRAL SPECIES 471 ENSGT00940000159958.c #22 ENSGT00950000183159.a.v.a #23 ENSGT00940000157306 #24 ENSGT00940000155988.c ENSGT00940000154372.a.b.a ENSGT00940000154372.a.a.b Clupeiformes ANCESTRAL SPECIES 22 ENSGT00940000153676.a ENSGT01030000234566.e.b.a.a.a.a ENSGT00940000156167.b ENSGT00390000009223 ENSGT00990000207961 ENSGT00940000159958.c #22 ENSGT00950000183159.a.v.a #23 ENSGT00940000157306 #24 ENSGT00940000155988.c ENSGT00940000154372.a.b.a ENSGT00940000154372.a.a.b Denticle herring MODERN SPECIES 14 vegfc (ENSDCDG00000015874) spcs3 (ENSDCDG00000015869) asb5b (ENSDCDG00000015861) ENSDCDG00000015856 ENSDCDG00000015852 ENSDCDG00000015848 #22 ENSDCDG00000015846 #23 uchl1 (ENSDCDG00000015749) #24 ENSDCDG00000015743 fgfbp2b (ENSDCDG00000015738) prom1b (ENSDCDG00000015558) Atlantic herring MODERN SPECIES 14 vegfc (ENSCHAG00000006654) spcs3 (ENSCHAG00000006598) asb5b (ENSCHAG00000006570) ACER2 (ENSCHAG00000006517) ENSCHAG00000006496 ENSCHAG00000006480 #22 limch1a (ENSCHAG00000005837) #23 uchl1 (ENSCHAG00000005743) #24 anxa5b (ENSCHAG00000002839) ENSCHAG00000002566 fgfbp2b (ENSCHAG00000002529) Otophysi ANCESTRAL SPECIES ENSGT00940000159958.c #22 Cyprinoidei ANCESTRAL SPECIES ENSGT00940000159958.c #22 Cyprininae ANCESTRAL SPECIES ENSGT00940000159958.c #22 Goldfish MODERN SPECIES 1375 exosc9 (ENSCARG00000029685) ENSCARG00000029665 #22 Otomorpha ANCESTRAL SPECIES 125 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00390000012346 ENSGT00940000155372 ENSGT00390000011368 #21 ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a Otophysi ANCESTRAL SPECIES 10 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a Characiphysae ANCESTRAL SPECIES 21 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b.a #23 ENSGT00940000155317.a.b ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a Characiphysae_b ANCESTRAL SPECIES 16 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b.a #23 ENSGT00940000155317.a.b ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a Characoidei ANCESTRAL SPECIES 47 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b.a #23 ENSGT00940000155317.a.b ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a Red-bellied piranha MODERN SPECIES 268 JAKMIP1 (ENSPNAG00000023245) rtn4rl2b (ENSPNAG00000023259) ENSPNAG00000023268 slc43a3b (ENSPNAG00000003766) smtnl1 (ENSPNAG00000023302) phox2bb (ENSPNAG00000023315) #22 ENSPNAG00000023342 #23 ENSPNAG00000023357 PCDH12 (ENSPNAG00000023365) Mexicana tetra MODERN SPECIES 16 rtn4rl2b (ENSAMXG00000036104) ENSAMXG00000029059 ENSAMXG00000044034 slc43a3b (ENSAMXG00000007555) smtnl1 (ENSAMXG00000032862) phox2bb (ENSAMXG00000043803) #22 ENSAMXG00000036476 #23 ENSAMXG00000037418 #23 ENSAMXG00000029657 PCDH12 (ENSAMXG00000015011) LTC4S (ENSAMXG00000039412) Channel catfish MODERN SPECIES 27 rtn4rl2b (ENSIPUG00000009468) ENSIPUG00000009473 ENSIPUG00000009577 slc43a3b (ENSIPUG00000009499) smtnl1 (ENSIPUG00000009601) phox2bb (ENSIPUG00000009610) #22 ENSIPUG00000009620 #23 ENSIPUG00000009629 ENSIPUG00000009653 pcdh12 (ENSIPUG00000009669) Ltc4s (ENSIPUG00000009679) Cyprinoidei ANCESTRAL SPECIES 9 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b #23 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 385 ENSGT00390000016928.d.f ENSGT00940000153713.B.c.u ENSGT00940000158505.n.a.f ENSGT00940000159958.d.b #22 ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d.a #22 ENSGT00950000183159.a.v.b #23 Goldfish MODERN SPECIES 5 WFS1 (ENSCARG00000022149) JAKMIP1 (ENSCARG00000022082) rtn4rl2b (ENSCARG00000022047) slc43a3b (ENSCARG00000021991) smtnl1 (ENSCARG00000021978) phox2bb (ENSCARG00000021973) #22 ENSCARG00000021955 #23 ENSCARG00000021946 ENSCARG00000021937 ENSCARG00000021928 cysltr1 (ENSCARG00000021914) Cyprininae_a ANCESTRAL SPECIES 480 ENSGT00390000016928.d.f ENSGT00940000153713.B.c.u ENSGT00940000158505.n.a.f ENSGT00940000159958.d.b #22 ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d.a #22 ENSGT00950000183159.a.v.b #23 ENSGT00390000008738.h Common carp reference MODERN SPECIES 35 rtn4rl2b (ENSCCRG00000020977) ENSCCRG00000060690 ENSCCRG00000075341 slc43a3b (ENSCCRG00000024913) smtnl1 (ENSCCRG00000024906) phox2bb (ENSCCRG00000067405) #22 ENSCCRG00000063035 #23 ENSCCRG00000058323 ENSCCRG00000076061 ENSCCRG00000016583 ENSCCRG00000065114 Golden-line barbel MODERN SPECIES 1799 slc43a3b (ENSSGRG00000016951) smtnl1 (ENSSGRG00000016952) phox2bb (ENSSGRG00000016954) #22 Cyprininae ANCESTRAL SPECIES 385 ENSGT00940000160999.c.b ENSGT00940000159900.b ENSGT00390000016928.d.f ENSGT00940000153713.B.c.u ENSGT00940000158505.n.a.f ENSGT00940000159958.d.b #22 ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d.a #22 ENSGT00950000183159.a.v.b #23 Goldfish MODERN SPECIES 3227 ENSCARG00000063329 ENSCARG00000063301 WFS1 (ENSCARG00000063106) JAKMIP1 (ENSCARG00000062671) rtn4rl2b (ENSCARG00000062616) phox2bb (ENSCARG00000062590) #22 Cyprininae_a ANCESTRAL SPECIES 480 ENSGT00940000160999.c.a.b ENSGT00940000159900.b ENSGT00390000016928.d.f ENSGT00940000153713.B.c.u ENSGT00940000158505.n.a.f ENSGT00940000159958.d.b #22 ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d.a #22 ENSGT00950000183159.a.v.b #23 ENSGT00390000008738.h Common carp reference MODERN SPECIES 20 spon2b (ENSCCRG00000080048) ENSCCRG00000057291 ENSCCRG00000036277 rtn4rl2b (ENSCCRG00000036280) smtnl1 (ENSCCRG00000009326) phox2bb (ENSCCRG00000024900) #22 ENSCCRG00000061990 slbp (ENSCCRG00000009478) ENSCCRG00000014441 ENSCCRG00000070302 ENSCCRG00000078410 Golden-line barbel MODERN SPECIES 146 spon2b (ENSSGRG00000038064) WFS1 (ENSSGRG00000038066) ENSSGRG00000038068 JAKMIP1 (ENSSGRG00000038069) rtn4rl2b (ENSSGRG00000038070) phox2bb (ENSSGRG00000038074) #22 cysltr1 (ENSSGRG00000038075) fam199x (ENSSGRG00000038077) ENSSGRG00000038079 p2ry10 (ENSSGRG00000038080) il1rapl2 (ENSSGRG00000038081) Zebrafish MODERN SPECIES 5 WFS1 (ENSDARG00000074617) JAKMIP1 (ENSDARG00000076090) rtn4rl2b (ENSDARG00000037495) slc43a3b (ENSDARG00000057949) smtnl1 (ENSDARG00000041257) phox2bb (ENSDARG00000091029) #22 dicp2.2 (ENSDARG00000099539) dicp2.1 (ENSDARG00000035101) ENSDARG00000103774 #23 tcirg1b (ENSDARG00000105142) sqstm1 (ENSDARG00000075014) Clupeiformes ANCESTRAL SPECIES 20 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00390000012346 ENSGT00940000155372 ENSGT00390000011368 #21 ENSGT00940000159958.d #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a Denticle herring MODERN SPECIES 9 ENSDCDG00000009756 anxa5a (ENSDCDG00000009802) bbs7 (ENSDCDG00000010792) ccna2 (ENSDCDG00000010811) tmem33 (ENSDCDG00000010814) #21 phox2bb (ENSDCDG00000010823) #22 LIMCH1 (ENSDCDG00000010937) #23 ENSDCDG00000013771 ENSDCDG00000013772 PCDH12 (ENSDCDG00000013775) LTC4S (ENSDCDG00000013776) Atlantic herring MODERN SPECIES 12 ENSCHAG00000020097 anxa5a (ENSCHAG00000020107) bbs7 (ENSCHAG00000020200) ccna2 (ENSCHAG00000020323) tmem33 (ENSCHAG00000020332) #21 phox2bb (ENSCHAG00000020341) #22 ENSCHAG00000020350 #23 ENSCHAG00000020368 PCDH12 (ENSCHAG00000020375) ENSCHAG00000020383 ENSCHAG00000020469 Euteleosteomorpha ANCESTRAL SPECIES 149 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b Protacanthopterygii ANCESTRAL SPECIES 71 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000161041 ENSGT00910000144269 ENSGT00730000114722 ENSGT00550000074935 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 291 ENSGT00940000154372.a.b.b.a ENSGT00940000155988.d.f ENSGT00940000155372.t ENSGT00390000012346 ENSGT00390000011368.c.b #21 ENSGT00940000159958.e #22 ENSGT00950000183159.a.v.b.c #23 ENSGT00940000161041.h ENSGT00910000144269.m Salmoninae_a ANCESTRAL SPECIES 18 ENSGT00940000154372.a.b.b.a ENSGT00940000155988.d.f ENSGT00940000155372.t ENSGT00390000012346 ENSGT00390000011368.c.b #21 ENSGT00940000159958.e #22 ENSGT00950000183159.a.v.b.c #23 ENSGT00940000161041.h ENSGT00910000144269.m ENSGT00550000074935.e ENSGT00940000163435 Salmo ANCESTRAL SPECIES 24 ENSGT00940000154372.a.b.b.a ENSGT00940000155988.d.f ENSGT00940000155372.t ENSGT00390000012346 ENSGT00390000011368.c.b #21 ENSGT00940000159958.e #22 ENSGT00950000183159.a.v.b.c #23 ENSGT00940000161041.h ENSGT00910000144269.m ENSGT00550000074935.e ENSGT00940000163435 River trout MODERN SPECIES 22 ENSSTUG00000022813 anxa5a (ENSSTUG00000022635) bbs7 (ENSSTUG00000022532) tmem33 (ENSSTUG00000022519) #21 ENSSTUG00000022507 phox2bb (ENSSTUG00000022498) #22 LIMCH1 (ENSSTUG00000022378) #23 kctd8 (ENSSTUG00000022366) PIGG (ENSSTUG00000021813) fnta (ENSSTUG00000021675) gstp1.2 (ENSSTUG00000021624) Atlantic salmon MODERN SPECIES 24 ENSSSAG00000004717 anxa5a (ENSSSAG00000004122) ccna2 (ENSSSAG00000004077) bbs7 (ENSSSAG00000004055) TMM33 (ENSSSAG00000004032) #21 ENSSSAG00000103979 #22 LIMCH1 (ENSSSAG00000003887) #23 ENSSSAG00000083240 ENSSSAG00000003772 ENSSSAG00000120090 ENSSSAG00000003736 Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00940000154372.a.b.b.a ENSGT00940000155988.d.f ENSGT00940000155372.t ENSGT00390000012346.a ENSGT00390000011368.c.b #21 ENSGT00940000159958.e #22 ENSGT00950000183159.a.v.b.c #23 ENSGT00940000161041.h ENSGT00910000144269.m ENSGT00550000074935.e ENSGT00940000162460.s.d Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000154372.a.b.b.a ENSGT00940000155988.d.f ENSGT00940000155372.t ENSGT00390000012346.a ENSGT00390000011368.c.b #21 ENSGT00940000159958.e #22 ENSGT00950000183159.a.v.b.c #23 ENSGT00940000161041.h ENSGT00910000144269.m ENSGT00550000074935.e ENSGT00940000162460.s.d Coho salmon MODERN SPECIES 10 ENSOKIG00005018771 anxa5a (ENSOKIG00005018778) ccna2 (ENSOKIG00005018857) bbs7 (ENSOKIG00005018896) TMEM33 (ENSOKIG00005019216) #21 phox2bb (ENSOKIG00005019251) #22 LIMCH1 (ENSOKIG00005019393) #23 kctd8 (ENSOKIG00005021282) PIGG (ENSOKIG00005021325) fnta (ENSOKIG00005021976) GSTP1 (ENSOKIG00005022083) Chinook salmon MODERN SPECIES 13 ENSOTSG00005047336 anxa5a (ENSOTSG00005047340) ccna2 (ENSOTSG00005047353) bbs7 (ENSOTSG00005047358) tmem33 (ENSOTSG00005047362) #21 phox2bb (ENSOTSG00005047365) #22 ENSOTSG00005047366 ##23 kctd8 (ENSOTSG00005047368) PIGG (ENSOTSG00005047376) fnta (ENSOTSG00005047388) GSTP1 (ENSOTSG00005047390) Rainbow trout MODERN SPECIES 5 anxa5a (ENSOMYG00000034079) CCNA2 (ENSOMYG00000034475) BBS7 (ENSOMYG00000034504) TMEM33 (ENSOMYG00000034535) #21 ENSOMYG00000075102 ENSOMYG00000034549 #22 LIMCH1 (ENSOMYG00000034624) #23 ENSOMYG00000034691 ENSOMYG00000034756 ENSOMYG00000075151 fnta (ENSOMYG00000035581) Huchen MODERN SPECIES 392 ENSHHUG00000044461 anxa5a (ENSHHUG00000044391) ccna2 (ENSHHUG00000044387) bbs7 (ENSHHUG00000044368) tmem33 (ENSHHUG00000044350) #21 phox2bb (ENSHHUG00000044348) #22 LIMCH1 (ENSHHUG00000044276) #23 kctd8 (ENSHHUG00000044274) PIGG (ENSHHUG00000044264) Salmoninae ANCESTRAL SPECIES 34 ENSGT00940000154372.a.a.a.c ENSGT00940000154372.a.b.b.b ENSGT00940000155988.d.e ENSGT00940000155372.s ENSGT00390000011368.c.a #21 ENSGT00940000159958.f #22 ENSGT00950000183159.a.v.b.d #23 Salmoninae_a ANCESTRAL SPECIES 40 ENSGT00940000154372.a.a.a.c ENSGT00940000154372.a.b.b.b ENSGT00940000155988.d.e ENSGT00940000155372.s ENSGT00390000011368.c.a #21 ENSGT00940000159958.f #22 ENSGT00950000183159.a.v.b.d #23 ENSGT00940000161041.g ENSGT00910000144269.n ENSGT00730000114722 ENSGT00550000074935.f Salmo ANCESTRAL SPECIES 43 ENSGT00940000154372.a.a.a.c ENSGT00940000154372.a.b.b.b ENSGT00940000155988.d.e ENSGT00940000155372.s ENSGT00390000011368.c.a #21 ENSGT00940000159958.f #22 ENSGT00950000183159.a.v.b.d #23 ENSGT00940000161041.g ENSGT00910000144269.n ENSGT00730000114722 ENSGT00550000074935.f Atlantic salmon MODERN SPECIES 28 fgfbp2a (ENSSSAG00000027653) fgfp1 (ENSSSAG00000095949) anxa5a (ENSSSAG00000018761) ENSSSAG00000114868 TMM33 (ENSSSAG00000017268) #21 ENSSSAG00000087053 #22 LIMCH1 (ENSSSAG00000016068) #23 ENSSSAG00000015945 ENSSSAG00000015779 ENSSSAG00000089265 ENSSSAG00000015654 River trout MODERN SPECIES 4 fgfbp2a (ENSSTUG00000005822) ENSSTUG00000005817 anxa5a (ENSSTUG00000005367) ccna2 (ENSSTUG00000005315) tmem33 (ENSSTUG00000005292) #21 phox2bb (ENSSTUG00000005284) #22 LIMCH1 (ENSSTUG00000004721) #23 kctd8 (ENSSTUG00000004668) PIGG (ENSSTUG00000004654) ENSSTUG00000004648 fnta (ENSSTUG00000004574) Oncorhynchus ANCESTRAL SPECIES 39 ENSGT00940000154372.a.b.b.b ENSGT00940000155988.d.e ENSGT00940000155372.s ENSGT00390000012346.b ENSGT00390000011368.c.a #21 ENSGT00940000159958.f #22 ENSGT00950000183159.a.v.b.d #23 ENSGT00940000161041.g ENSGT00910000144269.n ENSGT00550000074935.f ENSGT00940000162460.s.c Oncorhynchus_a ANCESTRAL SPECIES 40 ENSGT00940000154372.a.a.a.c ENSGT00940000154372.a.b.b.b ENSGT00940000155988.d.e ENSGT00940000155372.s ENSGT00390000011368.c.a #21 ENSGT00940000159958.f #22 ENSGT00950000183159.a.v.b.d #23 ENSGT00940000161041.g ENSGT00910000144269.n ENSGT00550000074935.f ENSGT00940000162460.s.c Chinook salmon MODERN SPECIES 32 fgfbp2a (ENSOTSG00005045985) ENSOTSG00005045986 anxa5a (ENSOTSG00005045994) ccna2 (ENSOTSG00005046216) tmem33 (ENSOTSG00005046218) #21 phox2bb (ENSOTSG00005046219) #22 LIMCH1 (ENSOTSG00005046220) #23 kctd8 (ENSOTSG00005046224) PIGG (ENSOTSG00005046227) fnta (ENSOTSG00005046234) GSTP1 (ENSOTSG00005046238) Coho salmon MODERN SPECIES 6 fgfbp2a (ENSOKIG00005023814) ENSOKIG00005023845 anxa5a (ENSOKIG00005023924) CCNA2 (ENSOKIG00005024932) tmem33 (ENSOKIG00005025095) #21 PHOX2B (ENSOKIG00005025189) #22 LIMCH1 (ENSOKIG00005025242) #23 KCTD8 (ENSOKIG00005025594) ENSOKIG00005025616 PIGG (ENSOKIG00005025635) FNTA (ENSOKIG00005025762) Rainbow trout MODERN SPECIES 23 anxa5a (ENSOMYG00000045371) CCNA2 (ENSOMYG00000045562) BBS7 (ENSOMYG00000045572) TMEM33 (ENSOMYG00000045586) #21 ENSOMYG00000045594 ENSOMYG00000055442 #22 LIMCH1 (ENSOMYG00000045622) #23 ENSOMYG00000045684 ENSOMYG00000045695 fnta (ENSOMYG00000045716) ENSOMYG00000045733 Huchen MODERN SPECIES 1837 ENSHHUG00000023570 ccna2 (ENSHHUG00000023572) ENSHHUG00000023575 ENSHHUG00000023578 TMEM33 (ENSHHUG00000023582) #21 phox2bb (ENSHHUG00000023620) #22 LIMCH1 (ENSHHUG00000023628) #23 Northern pike MODERN SPECIES 3 anxa5a (ENSELUG00000003008) ccna2 (ENSELUG00000002896) bbs7 (ENSELUG00000002880) tmem33 (ENSELUG00000002853) #21 ENSELUG00000002843 phox2bb (ENSELUG00000024615) #22 LIMCH1 (ENSELUG00000024591) #23 kctd8 (ENSELUG00000031922) ENSELUG00000025414 PIGG (ENSELUG00000019371) ENSELUG00000027633 Acanthomorphata ANCESTRAL SPECIES 73 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Cod MODERN SPECIES 1 ANXA5 (ENSGMOG00000019400) ENSGMOG00000030162 CCNA2 (ENSGMOG00000012712) BBS7 (ENSGMOG00000012717) TMEM33 (ENSGMOG00000012721) #21 ENSGMOG00000034262 #22 LIMCH1 (ENSGMOG00000023784) #23 ENSGMOG00000012732 lbx2 (ENSGMOG00000022499) pcgf1 (ENSGMOG00000016075) fgf24 (ENSGMOG00000028793) Euacanthomorphacea ANCESTRAL SPECIES 10 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Percomorphaceae ANCESTRAL SPECIES 11 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Percomorphaceae_B ANCESTRAL SPECIES 14 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Percomorphaceae_C ANCESTRAL SPECIES 16 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Eupercaria ANCESTRAL SPECIES 12 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Tetraodontidae ANCESTRAL SPECIES 9 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Tetraodon MODERN SPECIES 14 prom1a (ENSTNIG00000013046) anxa5a (ENSTNIG00000013047) ccna2 (ENSTNIG00000013048) bbs7 (ENSTNIG00000013049) tmem33 (ENSTNIG00000013050) #21 phox2bb (ENSTNIG00000013051) #22 LIMCH1 (ENSTNIG00000013052) #23 ctsz (ENSTNIG00000013053) lbx2 (ENSTNIG00000013054) pcgf1 (ENSTNIG00000013055) fgf24 (ENSTNIG00000013056) Fugu MODERN SPECIES 5 ENSTRUG00000006847 anxa5a (ENSTRUG00000006853) ccna2 (ENSTRUG00000007066) bbs7 (ENSTRUG00000007380) tmem33 (ENSTRUG00000007428) #21 phox2bb (ENSTRUG00000007442) #22 LIMCH1 (ENSTRUG00000007537) #23 ENSTRUG00000007731 ENSTRUG00000030013 nanos1 (ENSTRUG00000021804) lbx2 (ENSTRUG00000025486) Eupecaria_A ANCESTRAL SPECIES 13 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Ballan wrasse MODERN SPECIES 468 ccna2 (ENSLBEG00000016252) bbs7 (ENSLBEG00000016317) tmem33 (ENSLBEG00000016411) #21 phox2bb (ENSLBEG00000016441) #22 ENSLBEG00000016463 #23 ENSLBEG00000016482 ctsz (ENSLBEG00000016521) nanos1 (ENSLBEG00000016559) Eupecaria_B ANCESTRAL SPECIES 13 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Eupecaria_C ANCESTRAL SPECIES 12 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Gilthead seabream MODERN SPECIES 9 anxa5a (ENSSAUG00010014484) ccna2 (ENSSAUG00010014495) bbs7 (ENSSAUG00010014501) tmem33 (ENSSAUG00010014552) #21 ENSSAUG00010014570 phox2bb (ENSSAUG00010014573) #22 LIMCH1 (ENSSAUG00010014577) #23 ENSSAUG00010014595 ENSSAUG00010014598 ctsz (ENSSAUG00010014606) nanos1 (ENSSAUG00010014612) Eupercaria_incertae_sedis ANCESTRAL SPECIES 39 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 European seabass MODERN SPECIES 12 fgfbp2a (ENSDLAG00005011747) FGFBP1 (ENSDLAG00005027041) anxa5a (ENSDLAG00005011468) CCNA2 (ENSDLAG00005011439) BBS7 (ENSDLAG00005011350) ENSDLAG00005011311 #22 ENSDLAG00005011011 ENSDLAG00005011029 #23 ENSDLAG00005011006 nanos1 (ENSDLAG00005010999) lbx2 (ENSDLAG00005032899) Large yellow croaker MODERN SPECIES 479 FGFBP1 (ENSLCRG00005015216) anxa5a (ENSLCRG00005015222) ccna2 (ENSLCRG00005015239) bbs7 (ENSLCRG00005015244) tmem33 (ENSLCRG00005015248) #21 phox2bb (ENSLCRG00005015251) #22 LIMCH1 (ENSLCRG00005015259) #23 ENSLCRG00005015287 ENSLCRG00005015288 ENSLCRG00005015289 ENSLCRG00005000271 Perciformes ANCESTRAL SPECIES 13 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Cottioidei ANCESTRAL SPECIES 9 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Stickleback MODERN SPECIES 3 anxa5a (ENSGACG00000016658) ENSGACG00000016664 ccna2 (ENSGACG00000016665) bbs7 (ENSGACG00000016673) tmem33 (ENSGACG00000016676) #21 phox2bb (ENSGACG00000016683) #22 LIMCH1 (ENSGACG00000016686) #23 ENSGACG00000016689 ENSGACG00000016691 nanos1 (ENSGACG00000016692) lbx2 (ENSGACG00000016693) Lumpfish MODERN SPECIES 1 FGFBP1 (ENSCLMG00005012612) anxa5a (ENSCLMG00005012615) ccna2 (ENSCLMG00005012694) bbs7 (ENSCLMG00005012695) tmem33 (ENSCLMG00005012707) #21 phox2bb (ENSCLMG00005012708) #22 ENSCLMG00005012709 #23 ENSCLMG00005012710 #23 ENSCLMG00005012712 nanos1 (ENSCLMG00005012714) ENSCLMG00005012716 Perciformes_a ANCESTRAL SPECIES 11 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Pike perch MODERN SPECIES 32 ENSSLUG00000006536 anxa5a (ENSSLUG00000006554) ccna2 (ENSSLUG00000006726) bbs7 (ENSSLUG00000006751) tmem33 (ENSSLUG00000006805) #21 phox2bb (ENSSLUG00000006850) #22 ENSSLUG00000006860 #23 ENSSLUG00000006866 ENSSLUG00000006873 #23 ENSSLUG00000006880 CTSZ (ENSSLUG00000006890) Channel bull blenny MODERN SPECIES 1 FGFBP1 (ENSCGOG00000011689) anxa5a (ENSCGOG00000011681) ccna2 (ENSCGOG00000011664) bbs7 (ENSCGOG00000011337) tmem33 (ENSCGOG00000011306) #21 phox2bb (ENSCGOG00000011304) #22 LIMCH1 (ENSCGOG00000011277) #23 ENSCGOG00000011270 nanos1 (ENSCGOG00000011266) lbx2 (ENSCGOG00000011264) pcgf1 (ENSCGOG00000011259) Percomorphaceae_D ANCESTRAL SPECIES 17 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Anabantaria ANCESTRAL SPECIES 15 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Zig-zag eel MODERN SPECIES 1 FGFBP1 (ENSMAMG00000016060) anxa5a (ENSMAMG00000015911) CCNA2 (ENSMAMG00000015888) BBS7 (ENSMAMG00000015828) TMEM33 (ENSMAMG00000015795) #21 ENSMAMG00000015788 #22 LIMCH1 (ENSMAMG00000015744) #23 ENSMAMG00000015711 ENSMAMG00000015692 nanos1 (ENSMAMG00000028036) lbx2 (ENSMAMG00000015453) Anabantoidei ANCESTRAL SPECIES 11 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Siamese fighting fish MODERN SPECIES 1 FGFBP1 (ENSBSLG00000008796) anxa5a (ENSBSLG00000008797) ccna2 (ENSBSLG00000008806) bbs7 (ENSBSLG00000008815) tmem33 (ENSBSLG00000008839) #21 phox2bb (ENSBSLG00000008910) #22 LIMCH1 (ENSBSLG00000009007) #23 nanos1 (ENSBSLG00000009293) ctsz (ENSBSLG00000009300) lbx2 (ENSBSLG00000009334) pcgf1 (ENSBSLG00000009347) Climbing perch MODERN SPECIES 1 FGFBP1 (ENSATEG00000005567) anxa5a (ENSATEG00000005587) CCNA2 (ENSATEG00000005793) BBS7 (ENSATEG00000005807) TMEM33 (ENSATEG00000005934) #21 ENSATEG00000005964 #22 LIMCH1 (ENSATEG00000005984) #23 ENSATEG00000006043 ENSATEG00000006070 nanos1 (ENSATEG00000006118) lbx2 (ENSATEG00000006173) Carangaria ANCESTRAL SPECIES 15 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Carangaria_A ANCESTRAL SPECIES 17 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Seriola ANCESTRAL SPECIES 31 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Yellowtail amberjack MODERN SPECIES 3227 anxa5a (ENSSLDG00000020728) ccna2 (ENSSLDG00000020748) bbs7 (ENSSLDG00000020761) tmem33 (ENSSLDG00000020781) #21 phox2bb (ENSSLDG00000020789) #22 ENSSLDG00000020803 #23 ENSSLDG00000020821 #23 ENSSLDG00000020834 #23 ENSSLDG00000020846 ctsz (ENSSLDG00000020890) Greater amberjack MODERN SPECIES 113 fgfbp2a (ENSSDUG00000008124) anxa5a (ENSSDUG00000008109) ccna2 (ENSSDUG00000008091) bbs7 (ENSSDUG00000008052) tmem33 (ENSSDUG00000008030) #21 phox2bb (ENSSDUG00000008009) #22 ENSSDUG00000007997 #23 ENSSDUG00000007963 #23 ENSSDUG00000007959 ctsz (ENSSDUG00000007940) nanos1 (ENSSDUG00000007879) Barramundi perch MODERN SPECIES 467 ENSLCAG00010026353 anxa5a (ENSLCAG00010026356) ccna2 (ENSLCAG00010026361) bbs7 (ENSLCAG00010026365) tmem33 (ENSLCAG00010026370) #21 phox2bb (ENSLCAG00010026373) #22 LIMCH1 (ENSLCAG00010026404) #23 ENSLCAG00010026485 Pleuronectoidei ANCESTRAL SPECIES 19 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Turbot MODERN SPECIES 4 ENSSMAG00000008603 anxa5a (ENSSMAG00000008545) CCNA2 (ENSSMAG00000008532) BBS7 (ENSSMAG00000008476) TMEM33 (ENSSMAG00000008440) #21 ENSSMAG00000022063 #22 ENSSMAG00000008200 #23 ENSSMAG00000008166 ENSSMAG00000008160 nanos1 (ENSSMAG00000028442) lbx2 (ENSSMAG00000008154) Tongue sole MODERN SPECIES 6 ENSCSEG00000004611 anxa5a (ENSCSEG00000004605) ccna2 (ENSCSEG00000004599) bbs7 (ENSCSEG00000004585) tmem33 (ENSCSEG00000004578) #21 phox2bb (ENSCSEG00000004572) #22 ENSCSEG00000004569 #23 ENSCSEG00000004565 #23 ENSCSEG00000004563 ctsz (ENSCSEG00000004552) nanos1 (ENSCSEG00000004547) Ovalentaria ANCESTRAL SPECIES 15 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155317.a.b ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 Ovalentaria_B ANCESTRAL SPECIES 13 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Pomacentridae ANCESTRAL SPECIES 58 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00990000208107 ENSGT00950000183135.B.a.b ENSGT00940000166497 Bicolor damselfish MODERN SPECIES 252 phox2bb (ENSSPAG00000010513) #22 ENSSPAG00000010579 #23 ENSSPAG00000010850 ENSSPAG00000010883 nanos1 (ENSSPAG00000011053) lbx2 (ENSSPAG00000011078) Pomacentridae_A ANCESTRAL SPECIES 60 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00990000208107 ENSGT00950000183135.B.a.b ENSGT00940000166497 Amphiprion ANCESTRAL SPECIES 256 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b.a ENSGT00990000208107 ENSGT00940000155317.a.b.b ENSGT00950000183135.B.a.b Clown anemonefish MODERN SPECIES 1698 FGFBP1 (ENSAOCG00000008662) anxa5a (ENSAOCG00000008796) ccna2 (ENSAOCG00000008821) bbs7 (ENSAOCG00000008900) tmem33 (ENSAOCG00000008939) #21 phox2bb (ENSAOCG00000008959) #22 ENSAOCG00000008976 #23 ENSAOCG00000008981 ENSAOCG00000009005 Orange clownfish MODERN SPECIES 4 ENSAPEG00000000648 anxa5a (ENSAPEG00000000308) ccna2 (ENSAPEG00000019431) bbs7 (ENSAPEG00000019379) tmem33 (ENSAPEG00000019346) #21 phox2bb (ENSAPEG00000019328) #22 LIMCH1 (ENSAPEG00000019181) #23 ENSAPEG00000019147 ENSAPEG00000019062 nanos1 (ENSAPEG00000019024) ENSAPEG00000019013 Spiny chromis MODERN SPECIES 809 ENSAPOG00000002872 anxa5a (ENSAPOG00000002889) ccna2 (ENSAPOG00000002921) bbs7 (ENSAPOG00000002998) tmem33 (ENSAPOG00000003026) #21 phox2bb (ENSAPOG00000003032) #22 ENSAPOG00000003051 #23 ENSAPOG00000003067 #23 Cichlidae ANCESTRAL SPECIES 8 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Pseudocrenilabrinae ANCESTRAL SPECIES 27 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Pseudocrenilabrinae_A ANCESTRAL SPECIES 31 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Haplochromini ANCESTRAL SPECIES 25 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Haplochromini_A ANCESTRAL SPECIES 28 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 P. nyererei MODERN SPECIES 315 FGFBP1 (ENSPNYG00000000927) anxa5a (ENSPNYG00000000939) ccna2 (ENSPNYG00000001054) bbs7 (ENSPNYG00000001093) tmem33 (ENSPNYG00000001141) #21 phox2bb (ENSPNYG00000001177) #22 ENSPNYG00000001215 #23 ENSPNYG00000001240 #23 ENSPNYG00000001281 nanos1 (ENSPNYG00000001325) lbx2 (ENSPNYG00000001372) Haplochromini_B ANCESTRAL SPECIES 45 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.r #23 ENSGT00940000155317.a.b ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Eastern happy MODERN SPECIES 11 FGFBP1 (ENSACLG00000013018) anxa5a (ENSACLG00000013020) ccna2 (ENSACLG00000013032) bbs7 (ENSACLG00000013055) tmem33 (ENSACLG00000013064) #21 phox2bb (ENSACLG00000013362) #22 LIMCH1 (ENSACLG00000013368) #23 ENSACLG00000013472 nanos1 (ENSACLG00000013474) lbx2 (ENSACLG00000013753) pcgf1 (ENSACLG00000013756) Zebra mbuna MODERN SPECIES 1102 FGFBP1 (ENSMZEG00005002471) anxa5a (ENSMZEG00005002493) ccna2 (ENSMZEG00005002532) bbs7 (ENSMZEG00005002574) tmem33 (ENSMZEG00005002633) #21 phox2bb (ENSMZEG00005002657) #22 LIMCH1 (ENSMZEG00005002675) #23 ENSMZEG00005002711 nanos1 (ENSMZEG00005002722) lbx2 (ENSMZEG00005002756) pcgf1 (ENSMZEG00005002774) Burton s mouthbrooder MODERN SPECIES 331 FGFBP1 (ENSHBUG00000019455) anxa5a (ENSHBUG00000019466) ccna2 (ENSHBUG00000019528) bbs7 (ENSHBUG00000019575) tmem33 (ENSHBUG00000019618) #21 phox2bb (ENSHBUG00000019627) #22 ENSHBUG00000019640 #23 ENSHBUG00000019684 nanos1 (ENSHBUG00000019798) lbx2 (ENSHBUG00000019810) pcgf1 (ENSHBUG00000019867) Lyretail cichlid MODERN SPECIES 348 FGFBP1 (ENSNBRG00000013772) anxa5a (ENSNBRG00000013787) ccna2 (ENSNBRG00000013847) bbs7 (ENSNBRG00000013875) tmem33 (ENSNBRG00000013931) #21 phox2bb (ENSNBRG00000013959) #22 ENSNBRG00000013975 #23 ENSNBRG00000013986 #23 ENSNBRG00000013997 nanos1 (ENSNBRG00000014018) lbx2 (ENSNBRG00000014077) Nile tilapia MODERN SPECIES 11 FGFBP1 (ENSONIG00000020950) anxa5a (ENSONIG00000001327) ccna2 (ENSONIG00000001338) bbs7 (ENSONIG00000001354) tmem33 (ENSONIG00000001363) #21 phox2bb (ENSONIG00000001369) #22 LIMCH1 (ENSONIG00000001371) #23 ENSONIG00000032026 lbx2 (ENSONIG00000040386) pcgf1 (ENSONIG00000001378) fgf24 (ENSONIG00000001385) Midas cichlid MODERN SPECIES 1085 FGFBP1 (ENSACIG00000018138) anxa5a (ENSACIG00000018207) ccna2 (ENSACIG00000018789) bbs7 (ENSACIG00000018877) tmem33 (ENSACIG00000018904) #21 phox2bb (ENSACIG00000018923) #22 ENSACIG00000018949 #23 ENSACIG00000019005 nanos1 (ENSACIG00000019022) lbx2 (ENSACIG00000019040) pcgf1 (ENSACIG00000019051) Atherinomorphae ANCESTRAL SPECIES 9 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Oryzias ANCESTRAL SPECIES 37 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 Oryzias_b ANCESTRAL SPECIES 23 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 Javanese ricefish MODERN SPECIES 1 fgfbp2a (ENSOJAG00000006768) ENSOJAG00000006761 anxa5a (ENSOJAG00000006663) bbs7 (ENSOJAG00000006324) tmem33 (ENSOJAG00000006285) #21 phox2bb (ENSOJAG00000006262) #22 ENSOJAG00000006197 #23 nanos1 (ENSOJAG00000006186) lbx2 (ENSOJAG00000006164) pcgf1 (ENSOJAG00000006122) ENSOJAG00000006072 Indian medaka MODERN SPECIES 8 anxa5a (ENSOMEG00000002931) ENSOMEG00000002942 ccna2 (ENSOMEG00000002951) bbs7 (ENSOMEG00000002989) tmem33 (ENSOMEG00000003014) #21 phox2bb (ENSOMEG00000003025) #22 LIMCH1 (ENSOMEG00000003079) #23 nanos1 (ENSOMEG00000003107) lbx2 (ENSOMEG00000003113) pcgf1 (ENSOMEG00000003141) ENSOMEG00000003153 Oryzias_a ANCESTRAL SPECIES 90 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 Chinese medaka MODERN SPECIES 786 FGFBP1 (ENSOSIG00000020561) anxa5a (ENSOSIG00000000782) ccna2 (ENSOSIG00000001202) bbs7 (ENSOSIG00000001207) tmem33 (ENSOSIG00000001250) #21 phox2bb (ENSOSIG00000001251) #22 ENSOSIG00000001252 #23 ENSOSIG00000001256 Japanese Medaka HdrR MODERN SPECIES 1 anxa5a (ENSORLG00000020086) ccna2 (ENSORLG00000020079) bbs7 (ENSORLG00000020070) tmem33 (ENSORLG00000020060) #21 ENSORLG00000023715 phox2bb (ENSORLG00000020052) #22 LIMCH1 (ENSORLG00000020038) #23 ENSORLG00000028906 Cyprinodontiformes ANCESTRAL SPECIES 8 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Aplocheiloidei ANCESTRAL SPECIES 13 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Mangrove rivulus MODERN SPECIES 40 ENSKMAG00000008840 anxa5a (ENSKMAG00000008817) ccna2 (ENSKMAG00000008797) bbs7 (ENSKMAG00000008717) tmem33 (ENSKMAG00000008662) #21 phox2bb (ENSKMAG00000008645) #22 LIMCH1 (ENSKMAG00000008557) #23 ctsz (ENSKMAG00000008511) nanos1 (ENSKMAG00000008477) ENSKMAG00000008455 lbx2 (ENSKMAG00000008434) Turquoise killifish MODERN SPECIES 1610 fgfbp2a (ENSNFUG00015002300) ENSNFUG00015002302 ANXA5A (ENSNFUG00015002322) bbs7 (ENSNFUG00015002409) tmem33 (ENSNFUG00015002439) #21 phox2bb (ENSNFUG00015002444) #22 LIMCH1 (ENSNFUG00015002450) #23 ctsz (ENSNFUG00015002469) NANOS1A (ENSNFUG00015002473) ENSNFUG00015002475 lbx2 (ENSNFUG00015002476) Cyprinodontoidei ANCESTRAL SPECIES 23 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Poeciliinae ANCESTRAL SPECIES 11 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.u #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Poecilia ANCESTRAL SPECIES 43 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.u #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 NAME_6 ANCESTRAL SPECIES 88 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b.u #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Amazon molly MODERN SPECIES 291 ENSPFOG00000020534 anxa5a (ENSPFOG00000018455) ccna2 (ENSPFOG00000018447) bbs7 (ENSPFOG00000018430) tmem33 (ENSPFOG00000018408) #21 phox2bb (ENSPFOG00000018404) #22 LIMCH1 (ENSPFOG00000018384) #23 ENSPFOG00000022273 ctsz (ENSPFOG00000018377) nanos1 (ENSPFOG00000020533) lbx2 (ENSPFOG00000018375) Sailfin molly MODERN SPECIES 1831 tmem33 (ENSPLAG00000011508) #21 phox2bb (ENSPLAG00000011527) #22 ENSPLAG00000011542 #23 ENSPLAG00000011563 #23 Guppy MODERN SPECIES 440 FGFBP1 (ENSPREG00000007194) anxa5a (ENSPREG00000007171) ccna2 (ENSPREG00000007160) bbs7 (ENSPREG00000007058) tmem33 (ENSPREG00000007019) #21 phox2bb (ENSPREG00000006998) #22 ENSPREG00000006982 #23 ENSPREG00000006962 #23 ctsz (ENSPREG00000006931) nanos1 (ENSPREG00000006901) lbx2 (ENSPREG00000006878) Platyfish MODERN SPECIES 15 ENSXMAG00000020068 anxa5a (ENSXMAG00000002063) ccna2 (ENSXMAG00000002057) bbs7 (ENSXMAG00000002045) tmem33 (ENSXMAG00000002033) #21 phox2bb (ENSXMAG00000022004) #22 LIMCH1 (ENSXMAG00000002013) #23 ctsz (ENSXMAG00000002006) nanos1 (ENSXMAG00000024788) lbx2 (ENSXMAG00000023338) pcgf1 (ENSXMAG00000001994) NAME_4 ANCESTRAL SPECIES 23 ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 #21 ENSGT00940000159958 #22 ENSGT00950000183159.a.v.b #23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 Mummichog MODERN SPECIES 2280 ENSFHEG00000019892 anxa5a (ENSFHEG00000020501) ccna2 (ENSFHEG00000020527) bbs7 (ENSFHEG00000020539) tmem33 (ENSFHEG00000020568) #21 phox2bb (ENSFHEG00000020583) #22 LIMCH1 (ENSFHEG00000020645) #23 ctsz (ENSFHEG00000020684) nanos1 (ENSFHEG00000020713) lbx2 (ENSFHEG00000020722) pcgf1 (ENSFHEG00000020761) Sheepshead minnow MODERN SPECIES 354 ENSCVAG00000013630 anxa5a (ENSCVAG00000013616) ccna2 (ENSCVAG00000013540) bbs7 (ENSCVAG00000013522) tmem33 (ENSCVAG00000013465) #21 phox2bb (ENSCVAG00000013444) #22 LIMCH1 (ENSCVAG00000013432) #23 ctsz (ENSCVAG00000013372) nanos1 (ENSCVAG00000013105) lbx2 (ENSCVAG00000013082) pcgf1 (ENSCVAG00000013076) Tiger tail seahorse MODERN SPECIES 353 ENSHCOG00000009642 anxa5a (ENSHCOG00000009931) ccna2 (ENSHCOG00000009956) bbs7 (ENSHCOG00000010044) tmem33 (ENSHCOG00000010094) #21 phox2bb (ENSHCOG00000010125) #22 LIMCH1 (ENSHCOG00000010161) #23 ENSHCOG00000010185 ctsz (ENSHCOG00000010305) ENSHCOG00000010320 nanos1 (ENSHCOG00000010326) Pinecone sodierfish MODERN SPECIES 1 emx3 (ENSMMDG00005024085) CCDC69 (ENSMMDG00005024088) gm2a (ENSMMDG00005024089) bbs7 (ENSMMDG00005024098) tmem33 (ENSMMDG00005024118) #21 phox2bb (ENSMMDG00005024119) #22 ENSMMDG00005024123 #23 ENSMMDG00005024124 #23 ENSMMDG00005024125 ctsz (ENSMMDG00005024127) nanos1 (ENSMMDG00005024128)